reseracher placholder

David Miller

Projects

0

Publications

152

Awards

0

Teaching

Research Advisor Accreditation
Advisor Type

Mentor

Current JCU Research Students
Characterisation of host-specific bacterial symbionts of corals
Doctor of Philosophy (Medical, Molecular and Veterinary Sciences)
Characterization of the CpG methylation distribution and patterns in the mushroom coral Heliofungia actiniformis
Doctor of Philosophy (Medical, Molecular and Veterinary Sciences)
Coral and Microbial Interactions during Progression of Black Band Disease (BBD)
Doctor of Philosophy (Agriculture, Environmental and Related Studies)
Insights into the molecular bases of coral-specific traits
Doctor of Philosophy (Medical, Molecular and Veterinary Sciences)
Role of Hybridization in Evolutionary History of Scleractinian Corals
Doctor of Philosophy (Natural and Physical Sciences)

Output

Research priorities for the sustainability of coral-rich western Pacific seascapes
2023
Cumming, Graeme S.; Adamska, Maja; Barnes, Michele L.; Barnett, Jon; Bellwood, David R.; Cinner, Jos...
Journal Publication Open Access ResearchOnline@JCU
Multiple opsins in a reef-building coral, Acropora millepora
2023
Mason, Benjamin M.; Koyanagi, Mitsumasa; Sugihara, Tomohiro; Iwasaki, Makoto; Slepak, Vladlen; Mille...
Journal Publication Open Access ResearchOnline@JCU
Wound healing and regeneration in the reef building coral Acropora millepora
2023
Xu, Jane; Mead, Oliver; Moya, Aurelie; Caglar, Cüneyt; Miller, David J.; Adamski, Marcin; Adamska, M...
Journal Publication Open Access ResearchOnline@JCU
Energy allocation trade-offs as a function of age in fungiid corals
2023
Grinblat, Mila; Eyal-Shaham, Lee; Eyal, Gal; Ben-Zvi, Or; Harii, Saki; Morita, Masaya; Sakai, Kazuhi...
Journal Publication Open Access ResearchOnline@JCU
Validation of key sponge symbiont pathways using genome-centric metatranscriptomics
2023
O'Brien, Paul A.; Tan, Shangjin; Frade, Pedro R.; Robbins, Steven J.; Engelberts, J. Pamela; Bell, S...
Journal Publication Open Access ResearchOnline@JCU
Bathymetric evolution of black corals through deep time
2023
Horowitz, Jeremy; Quattrini, Andrea M.; Brugler, Mercer R.; Miller, David J.; Pahang, Kristina; Brid...
Journal Publication Open Access ResearchOnline@JCU
Urbanization comprehensively impairs biological rhythms in coral holobionts
2022
Rosenberg, Yaeli; Simon-Blecher, Noa; Lalzar, Maya; Yam, Ruth; Shemesh, Aldo; Alon, Shahar; Perna, G...
Journal Publication Open Access ResearchOnline@JCU
Evolutionary Responses of a Reef-building Coral to Climate Change at the End of the Last Glacial Maximum
2022
Zhang, Jia; Richards, Zoe T.; Adam, Arne A.S.; Chan, Cheong Xin; Shinzato, Chuya; Gilmour, James; Th...
Journal Publication Open Access ResearchOnline@JCU
Newly Discovered Peptides from the Coral Heliofungia actiniformis Show Structural and Functional Diversity
2022
Schmidt, Casey A.; Cooke, Ira; Wilson, David T.; Miller, David J.; Peigneur, Steve; Tytgat, Jan; Fie...
Journal Publication ResearchOnline@JCU
DMSP production by coral-associated bacteria
2022
Kuek, Felicity; Motti, Cherie; Zhang, Jia; Cooke, Ira R.; Todd, Jonathan D.; Miller, David J.; Bourn...
Journal Publication Open Access ResearchOnline@JCU
The Role of DNA Methylation in Genome Defense in Cnidaria and Other Invertebrates
2022
Ying, Hua; Hayward, David C.; Klimovich, Alexander; Bosch, Thomas C.U.; Baldassarre, Laura; Neeman, ...
Journal Publication Open Access ResearchOnline@JCU
High regenerative capacity is a general feature within colonial dendrophylliid corals (Anthozoa, Scleractinia)
2021
Pereira Luz, Bruna Louise; Miller, David; Kitahara, Marcelo Visentini (2021) 'High regenerative capa. Journal of Experimen, 336 (3):281-292. ...
Journal Publication ResearchOnline@JCU
Biogeography, reproductive biology and phylogenetic divergence within the Fungiidae (mushroom corals)
2021
Grinblat, Mila; Cooke, Ira; Shlesinger, Tom; Ben-Zvi, Or; Loya, Yossi; Miller, David J.; Cowman, Pet...
Journal Publication ResearchOnline@JCU
Testing cophylogeny between coral reef invertebrates and their bacterial and archaeal symbionts
2021
O'Brien, Paul A.; Andreakis, Nikolaos; Tan, Shangjin; Miller, David; Webster, Nicole S.; Zhang, Guoj...
Journal Publication ResearchOnline@JCU
AmAMP1 from Acropora millepora and damicornin define a family of coral-specific antimicrobial peptides related to the Shk toxins of sea anemones
2021
Mason, B.; Cooke, I.; Moya, A.; Augustin, R.; Lin, M.F.; Satoh, N.; Bosch, T.C.G.; Bourne, D.G.; Hay...
Journal Publication ResearchOnline@JCU
Broad scale proteomic analysis of heat-destabilised symbiosis in the hard coral acropora millepora
2021
Petrou, K.; Nunn, B. L.; Padula, M. P.; Miller, D. J.; Nielsen, D. A. (2021) 'Broad scale proteomic . Scientific Reports, 11 :19061-19061. ...
Journal Publication Open Access ResearchOnline@JCU
Conservation and turnover of miRNAs and their highly complementary targets in early branching animals
2021
Praher, Daniela; Zimmermann, Bob; Dnyansagar, Rohit; Miller, David J.; Moya, Aurelie; Modepalli, Ven...
Journal Publication Open Access ResearchOnline@JCU
The significance of genotypic diversity in coral competitive interaction: a transcriptomic perspective
2021
Andrade Rodriguez, N.; Moya, A.; Jones, R.; Miller, D.J.; Cooke, I. (2021) 'The significance of geno. Frontiers in Ecology a, 9 . [DOI] ...
Journal Publication Open Access ResearchOnline@JCU
Early eukaryotic origins and metazoan elaboration of MAPR family proteins
2020
Hehenberger, Elisabeth; Eitel, Michael; Fortunato, Sofia A.V.; Miller, David J.; Keeling, Patrick J....
Journal Publication ResearchOnline@JCU
Diverse coral reef invertebrates exhibit patterns of phylosymbiosis
2020
O'Brien, Paul A.; Tan, Shangjin; Yang, Chentao; Frade, Pedro R.; Andreakis, Nikolaos; Smith, Hillary...
Journal Publication Open Access ResearchOnline@JCU
An enhanced target-enrichment bait set for Hexacorallia provides phylogenomic resolution of the staghorn corals (Acroporidae) and close relatives
2020
Cowman, Peter F.; Quattrini, Andrea M.; Bridge, Tom C.L.; Watkins-Colwell, Gregory J.; Fadli, Nur; G...
Journal Publication ResearchOnline@JCU
A field and video annotation guide for baited remote underwater stereo-video surveys of demersal fish assemblages
2020
Langlois, Tim; Goetze, Jordan; Bond, Todd; Monk, Jacquomo; Abesamis, Rene A.; Asher, Jacob; Barrett,...
Journal Publication Open Access ResearchOnline@JCU
Genomic signatures in the coral holobiont reveal host adaptations driven by Holocene climate change and reef specific symbionts
2020
Cooke, Ira; Ying, Hua; Forêt, Sylvain; Bongaerts, Pim; Strugnell, Jan M.; Simakov, Oleg; Zhang, Jia;...
Journal Publication Open Access ResearchOnline@JCU
What lies beneath: Hydra provides cnidarian perspectives into the evolution of FGFR docking proteins
2020
Suryawanshi, Ashwini; Schaefer, Karolin; Holz, Oliver; Apel, David; Lange, Ellen; Hayward, David C.;...
Journal Publication Open Access ResearchOnline@JCU
ampir: an R package for fast genome-wide prediction of antimicrobial peptides
2020
Fingerhut, Legana C. H. W.; Miller, David J.; Strugnell, Jan M.; Daly, Norelle L.; Cooke, Ira R. (20...
Journal Publication ResearchOnline@JCU
Dual RNA-sequencing analyses of a coral and its native symbiont during the establishment of symbiosis
2020
Mohamed, Amin R.; Andrade, Natalia; Moya, Aurelie; Chan, Cheong Xin; Negri, Andrew P.; Bourne, David...
Journal Publication ResearchOnline@JCU
Comparative transcriptomic analyses of Chromera and Symbiodiniaceae
2020
Mohamed, Amin R.; Chan, Cheong Xin; Ragan, Mark A.; Zhang, Jia; Cooke, Ira; Ball, Eldon E.; Miller, ...
Journal Publication ResearchOnline@JCU
Identification and characterization of a peptide from the stony coral Heliofungia actiniformis
2020
Schmidt, Casey A.; Wilson, David T.; Cooke, Ira; Potriquet, Jeremy; Tungatt, Katie; Muruganandah, Vi...
Journal Publication ResearchOnline@JCU
Molecular techniques and their limitations shape our view of the holobiont
2019
Cooke, Ira; Mead, Oliver; Whalen, Casey; Boote, Chloe; Moya, Aurelie; Ying, Hua; Robbins, Steven; St...
Journal Publication ResearchOnline@JCU
Transcriptomic analyses highlight the likely metabolic consequences of colonization of a cnidarian host by native or non-native Symbiodinium species
2019
Lin, Mei-Fang; Takahashi, Shunichi; Foret, Sylvain; Davy, Simon K.; Miller, David J. (2019) 'Transcr. Biolo, 8 (...
Journal Publication Open Access ResearchOnline@JCU
The whole-genome sequence of the coral Acropora millepora
2019
Ying, Hua; Hayward, David C.; Cooke, Ira; Wang, Weiwen; Moya, Aurelie; Siemering, Kirby R.; Sprungal...
Journal Publication Open Access ResearchOnline@JCU
A genomic view of the reef-building coral Porites lutea and its microbial symbionts
2019
Robbins, Steven J.; Singleton, Caitlin M.; Chan, Cheong Xin; Messer, Lauren F.; Geers, Aileen U.; Yi...
Journal Publication ResearchOnline@JCU
Resolving structure and function of metaorganisms through a holistic framework combining reductionist and integrative approaches
2019
Jaspers, Cornelia; Fraune, Sebastian; Arnold, A. Elizabeth; Miller, David J.; Bosch, Thomas C.G.; Vo...
Journal Publication Open Access ResearchOnline@JCU
Host-microbe coevolution: applying evidence from model systems to complex marine invertebrate holobionts
2019
O'Brien, Paul; Webster, Nicole S.; Miller, David J.; Bourne, David G. (2019) 'Host-microbe coevoluti. mBio, 10 (1). [DOI] ...
Journal Publication Open Access ResearchOnline@JCU
Transcriptomic analysis reveals protein homeostasis breakdown in the coral Acropora millepora during hypo-saline stress
2019
Aguilar, Catalina; Raina, Jean-Baptiste; Fôret, Sylvain; Hayward, David C.; Lapeyre, Bruno; Bourne, ...
Journal Publication Open Access ResearchOnline@JCU
Expression of the neuropeptides RFamide and LWamide during development of the coral Acropora millepora in relation to settlement and metamorphosis
2019
Attenborough, Rosalind M.F.; Hayward, David C.; Wiedemann, Ursula; Foret, Sylvain; Miller, David J.;...
Journal Publication Open Access ResearchOnline@JCU
Finding Nemo's genes: a chromosome-scale reference assembly of the genome of the orange clownfish Amphiprion percula
2019
Lehmann, Robert; Lightfoot, Damien; Schunter, Celia; Michell, Craig T.; Ohyanagi, Hajime; Mineta, Ka...
Journal Publication Open Access ResearchOnline@JCU
Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis
2018
Liu, Huanle; Stephens, Timothy G.; González-Pech, Raúl A.; Beltran, Victor H.; Lapeyre, Bruno; Bonga...
Journal Publication Open Access ResearchOnline@JCU
Setting the pace: host rhythmic behaviour and gene expression patterns in the facultatively symbiotic cnidarian Aiptasia are determined largely by Symbiodinium
2018
Sorek, Michal; Schnytzer, Yisrael; Ben-Asher, Hiba Waldman; Caspi, Vered Chalifa; Chen, Chii-Shiarng...
Journal Publication Open Access ResearchOnline@JCU
Deciphering the nature of the coral-Chromera association
2018
Mohamed, Amin R.; Cumbo, Vivian R.; Harii, Saki; Shinzato, Chuya; Chan, Cheong Xin; Ragan, Mark A.; ...
Journal Publication Open Access ResearchOnline@JCU
Universal target-enrichment baits for anthozoan (Cnidaria) phylogenomics: new approaches to long-standing problems
2018
Quattrini, Andrea M.; Faircloth, Brant C.; Dueñas, Luisa F.; Bridge, Tom C.L.; Brugler, Mercer R.; C...
Journal Publication ResearchOnline@JCU
Comparative genomics reveals the distinct evolutionary trajectories of the robust and complex coral lineages
2018
Ying, Hua; Cooke, Ira; Sprungala, Susanne; Wang, Weiwen; Hayward, David C.; Tang, Yurong; Huttley, G...
Journal Publication Open Access ResearchOnline@JCU
Transcriptomic analysis of the response of Acropora millepora to hypo-osmotic stress provides insights into DMSP biosynthesis by corals
2017
Aguilar, Catalina; Raina, Jean-Baptiste; Motti, Cherie A.; Foret, Sylvain; Hayward, David C.; Lapeyr...
Journal Publication Open Access ResearchOnline@JCU
The microbiome of the octocoral Lobophytum pauciflorum: minor differences between sexes and resilience to short-term stress
2017
Wessels, Wiebke; Sprungala, Susanne; Watson, Sue-Ann; Miller, David J.; Bourne, David G. (2017) 'The. F,...
Journal Publication ResearchOnline@JCU
Analyses of corallimorpharian transcriptomes provide new perspectives on the evolution of calcification in the Scleractinia (corals)
2017
Lin, Mei-Fang; Moya, Aurelie; Ying, Hua; Chen, Chaolun Allen; Cooke, Ira; Ball, Eldon E.; Forȇt, Syl...
Journal Publication Open Access ResearchOnline@JCU
Loss and gain of group I introns in the mitochondrial cox1 gene of the scleractinia (cnidaria; anthozoa)
2017
Chuang, Yaoyang; Kitahara, Marcelo; Fukami, Hironobu; Tracey, Dianne; Miller, David J.; Chen, Chaolu...
Journal Publication ResearchOnline@JCU
Rapid adaptive responses to climate change in corals
2017
Torda, Gergely; Donelson, Jennifer M.; Aranda, Manuel; Barshis, Daniel J.; Bay, Line; Berumen, Micha...
Journal Publication ResearchOnline@JCU
The transcriptomic response of the coral Acropora digitifera to a competent Symbiodinium strain: the symbiosome as an arrested early phagosome
2016
Mohamed, A.R.; Cumbo, V.; Harii, S.; Shinzato, C.; Chan, C.X.; Ragan, M.A.; Bourne, D.G.; Willis, B....
Journal Publication ResearchOnline@JCU
Near-future pH conditions severely impact calcification, metabolism and the nervous system in the pteropod Heliconoides inflatus
2016
Moya, Aurelie; Howes, Ella L.; Lacoue-Labarthe, Thomas; Foret, Sylvain; Hanna, Bishoy; Medina, Mónic...
Journal Publication Open Access ResearchOnline@JCU
Corallimorpharians are not "naked corals": insights into relationships between Scleractinia and Corallimorpharia from phylogenomic analyses
2016
Lin, Mei Fang; Chou, Wen Hwa; Kitahara, Marcelo V.; Chen, Chao Lun Allen; Miller, David John; Forêt,...
Journal Publication Open Access ResearchOnline@JCU
Functional conservation of the apoptotic machinery from coral to man: the diverse and complex Bcl-2 and caspase repertoires of Acropora millepora
2016
Moya, Aurelie; Sakamaki, Kazuhiro; Mason, Benjamin M.; Huisman, Lotte; Forêt, Sylvain; Weiss, Yvonne...
Journal Publication Open Access ResearchOnline@JCU
Complete mitochondrial genome sequences of Atlantic representatives of the invasive Pacific coral species Tubastraea coccinea and T. tagusensis (Scleractinia, Dendrophylliidae): implications for species identification
2016
Capel, K.C.C.; Migotto, A.E.; Zilberberg, C.; Lin, M.F.; Forsman, Z.; Miller, D.J.; Kitahara, M.V. (...
Journal Publication ResearchOnline@JCU
Rapid acclimation of juvenile corals to CO2-mediated acidification by upregulation of heat shock protein and Bcl-2 genes
2015
Moya, A.; Huisman, L.; Fêret, S.; Gattuso, J-P.; Hayward, D.C.; Ball, E.E.; Miller, D.J. (2015) 'Rap. M,...
Journal Publication ResearchOnline@JCU
The ReFuGe 2020 Consortium: using "omics" approaches to explore the adaptability and resilience of coral holobionts to environmental change
2015
Voolstra, Christian R.; Miller, David J.; Ragan, Mark A.; Hoffmann, Ary A.; Hoegh-Guldberg, Ove; Bou...
Journal Publication Open Access ResearchOnline@JCU
The organizer in evolution–gastrulation and organizer gene expression highlight the importance of Brachyury during development of the coral, Acropora millepora
2015
Hayward, David C.; Grasso, Lauretta C.; Saint, Robert; Miller, David J.; Ball, Eldon E. (2015) 'The . De, ...
Journal Publication ResearchOnline@JCU
Transcriptomic differences between day and night in Acropora millepora provide new insights into metabolite exchange and light-enhanced calcification in corals
2015
Bertucci, A.; Forêt, S.; Ball, E.E.; Miller, D.J. (2015) 'Transcriptomic differences between day and. Molecular Ecology, 24 (17):4489-4504. [DOI] ...
Journal Publication ResearchOnline@JCU
Evolutionary analyses of caspase-8 and its paralogs: deep origins of the apoptotic signaling pathways
2015
Sakamaki, Kazuhiro; Imai, Kenichiro; Tomii, Kentaro; Miller, David J. (2015) 'Evolutionary analyses . BioEssays, 37 (7):767-776. [ ...
Journal Publication ResearchOnline@JCU
Host coenzyme Q redox state is an early biomarker of thermal stress in the coral Acropora millepora
2015
Lutz, Adrian; Raina, Jean-Baptiste; Motti, Cherie A.; Miller, David J.; van Oppen, Madeleine J.H. (2...
Journal Publication Open Access ResearchOnline@JCU
Simultaneous determination of coenzyme Q and plastoquinone redox states in the coral-Symbiodinium symbiosis during thermally induced bleaching
2014
Lutz, Adrian; Motti, Cherie A.; Freckelton, Mamie L.; Van Oppen, Madeleine J.H.; Miller, David J.; D...
Journal Publication ResearchOnline@JCU
The "naked coral" hypothesis revisited: evidence for and against Scleractinian monophyly
2014
Kitahara, Marcelo V.; Lin, Mei-Fang; Forêt, Sylvain; Huttley, Gavin; Miller, David J.; Chen, Chaolun...
Journal Publication Open Access ResearchOnline@JCU
Mitochondrial genome rearrangements in the Scleractinia/Corallimorpharia complex: implications for coral phylogeny
2014
Lin, Mei-Fang; Kitahara, Marcelo Visentini; Luo, Haiwei; Tracey, Dianne; Geller, Jonathan; Fukami, H...
Journal Publication Open Access ResearchOnline@JCU
How do environmental factors influence life cycles and development? An experimental framework for early-diverging metazoans
2014
Bosch, Thomas C.G.; Adamska, Maja; Augustin, René; Domazet-Loso, Tomislav; Foret, Sylvain; Fraune, S...
Journal Publication ResearchOnline@JCU
The apoptotic initiator Caspase-8: its functional ubiquity and genetic diversity during animal evolution
2014
Sakamaki, Kazuhiro; Shimizu, Kouhei; Iwata, Hiroaki; Imai, Kenichiro; Satou, Yutaka; Funayama, Norik...
Journal Publication ResearchOnline@JCU
Molecular phylogenetics of geographically restricted Acropora species: implications for threatened species conservation
2013
Richards, Z.T.; Miller, D.J.; Wallace, C.C. (2013) 'Molecular phylogenetics of geographically restri. Molecular Phylogenetics and Evolution, 69 (3):837-851. [DOI] ...
Journal Publication ResearchOnline@JCU
The acute transcriptional response of the coral Acropora millepora to immune challenge: expression of GiMAP/IAN genes links the innate immune responses of corals with those of mammals and plants
2013
Weiss, Yvonne; Forêt, Sylvain; Hayward, David C.; Ainsworth, Tracy; King, Rob; Ball, Eldon E.; Mille...
Journal Publication Open Access ResearchOnline@JCU
Deltocyathiidae, an early-diverging family of Robust corals (Anthozoa, Scleractinia)
2013
Kitahara, Marcelo V.; Cairns, Stephen D.; Stolarski, Jaroslaw; Miller, David J. (2013) 'Deltocyathii. Zoologica , 42 (2):2...
Journal Publication ResearchOnline@JCU
The skeletal proteome of the coral Acropora millepora: the evolution of calcification by co-option and domain shuffling
2013
Ramos-Silva, Paula; Kaandorp, Jaap; Huisman, Lotte; Marie, Benjamin; Zanella-Cléon, Isabelle; Guicha...
Journal Publication Open Access ResearchOnline@JCU
The complex NOD-like receptor repertoire of the coral Acropora digitifera includes novel domain combinations
2013
Hamada, Mayuko; Shoguchi, Eiichi; Shinzato, Chuya; Kawashima, Takeshi; Miller, David J.; Satoh, Nori...
Journal Publication ResearchOnline@JCU
Whole transcriptome analysis of the coral Acropora millepora reveals complex responses to CO2-driven acidification during the initiation of calcification
2012
Moya, A.; Huisman, L.; Ball, E.E.; Hayward, D.C.; Grasso, L.C.; Chua, C.M.; Woo, H.N.; Gattuso, J.-P...
Journal Publication ResearchOnline@JCU
Novel organization of the mitochondrial genome in the deep-sea coral, Madrepora oculata (Hexacorallia, Scleractinia, Oculinidae) and its taxonomic implications
2012
Lin, Mei-Fang; Kitahara, Marcelo Visentini; Tachikawa, Hiroyuki; Fukami, Hironobu; Miller, David Joh...
Journal Publication ResearchOnline@JCU
Mitogenome polymorphism in a single branch sample revealed by SOLiD deep sequencing of the Lophelia pertusa coral genome
2012
Emblem, Ase; Karlsen, Bard Ove; Evertsen, Jussi; Miller, David J.; Moum, Truls; Johansen, Steinar D....
Journal Publication ResearchOnline@JCU
Major cellular and physiological impacts of ocean acidification on a reef building coral
2012
Kaniewska, Paulina; Campbell, Paul R.; Kline, David I.; Rodriguez-Lanetty, Mauricio; Miller, David J...
Journal Publication Open Access ResearchOnline@JCU
The first modern solitary Agariciidae (Anthozoa, Scleractinia) revealed by molecular and microstructural analysis
2012
Kitahara, Marcelo V.; Stolarski, Jaroslaw; Cairns, Stephen D.; Benzoni, Francesca; Stake, Joel L.; M...
Journal Publication ResearchOnline@JCU
The neuronal calcium sensor protein acrocalcin: a potential target of calmodulin regulation during development in the coral Acropora millepora
2012
Reyes-Bermudez, Alejandro; Miller, David J.; Sprungala, Susanne (2012) 'The neuronal calcium sensor . PLoS ONE, 7 (12):1-8. [DOI] ...
Journal Publication Open Access ResearchOnline@JCU
Coral thermal tolerance: tuning gene expression to resist thermal stress
2012
Bellantuono, Anthony J.; Granados-Cifuentes, Camila; Miller, David J.; Hoegh-Guldberg, Ove; Rodrigue...
Journal Publication Open Access ResearchOnline@JCU
A "neural" enzyme in nonbilaterian animals and algae: preneural origins for peptidylglycine α-amidating monooxygenase
2012
Attenborough, Rosalind M.F.; Hayward, David C.; V. Kitahara, Marcelo; Miller, David J.; Ball, Eldon ...
Journal Publication ResearchOnline@JCU
Expression of putative immune response genes during early ontogeny in the coral Acropora millepora
2012
Puill-Stephan, Eneour; Seneca, François O.; Miller, David J.; van Oppen, Madeleine J.H.; Willis, Bet...
Journal Publication Open Access ResearchOnline@JCU
Defining the tipping point. A complex cellular life/death balance in corals in response to stress
2011
Ainsworth, T.D.; Wasmund, K.; Ukani, L.; Seneca, F.; Yellowlees, D.; Miller, D.; Leggat, W. (2011) '....
Journal Publication Open Access ResearchOnline@JCU
The ancient evolutionary origins of Scleractinia revealed by azooxanthellate corals
2011
Stolarski, Jarosław; Kitahara, Marcelo V.; Miller, David J.; Cairns, Stephen D.; Mazur, Maciej; Meib...
Journal Publication Open Access ResearchOnline@JCU
Using the Acropora digitifera genome to understand coral responses to environmental change
2011
Shinzato, Chuya; Shoguchi, Eiichi; Kawashimi, Takeshi; Hamada, Mayuko; Hisata, Kanako; Tanaka, Makik...
Journal Publication Open Access ResearchOnline@JCU
Complex diel cycles of gene expression in coral-algal symbiosis
2011
Levy, O.; Kaniewska, P.; Alon, S.; Eisenberg, E.; Karako-Lampert , S.; Bay, L.K.; Reef, R.; Rodrigue...
Journal Publication ResearchOnline@JCU
Defining the origins of the NOD-like receptor system at the base of animal evolution
2011
Lange, Christina; Hemmrich, Georg; Klostermeier, Ulrich C. ; López-Quintero, Javier A. ; Miller, Dav...
Journal Publication ResearchOnline@JCU
Identification of fast-evolving genes in the scleractinian Coral Acropora using comparative EST analysis
2011
Iguchi, Akira; Shinzato, Chuya ; Forêt, Sylvain; Miller, David J. (2011) 'Identification of fast-evo. PLoS ONE, 6 (6):1-6. [DOI] ...
Journal Publication Open Access ResearchOnline@JCU
The biology of coral metamorphosis: molecular responses of larvae to inducers of settlement and metamorphosis
2011
Grasso, L.C.; Negri, A.P.; Fôret, S.; Saint, R.; Hayward, D.C.; Miller, D.J.; Ball, E.E. (2011) 'The. D,...
Journal Publication ResearchOnline@JCU
Differential gene expression at coral settlement and metamorphosis: a subtractive hybridization study
2011
Hayward, David C.; Hetherington, Suzannah; Behm, Carolyn A.; Grasso, Lauretta C.; Forêt, Sylvain; Mi...
Journal Publication Open Access ResearchOnline@JCU
Phylogenomics reveals an anomalous distribution of USP genes in metazoans
2011
Forêt, Sylvain; Seneca, François; De Jong, Danielle; Bieller, Annette; Hemmrich, Georg; Augustin, Re...
Journal Publication ResearchOnline@JCU
Archetypal elkhorn coral discovered in the Pacific Ocean
2010
Richards, Zoe T.; Wallace, Carden C.; Miller, David J. (2010) 'Archetypal elkhorn coral discovered i. Systematics and Biodiversity, 8 (2):281-288. [DOI] ...
Journal Publication ResearchOnline@JCU
Putting placozoans on the (phylogeographic) map
2010
Ball, Eldon E.; Miller, David J. (2010) 'Putting placozoans on the (phylogeographic) map'. Molecular Ecology, 19 (11):2181-2183. [DOI] ...
Journal Publication ResearchOnline@JCU
New tricks with old genes: the genetic bases of novel cnidarian traits
2010
Forêt, Sylvain; Knack, Brent; Houliston, Evelyn; Momose, Tsuyoshi; Manuel, Michael; Quéinnec, Eric; ...
Journal Publication ResearchOnline@JCU
Coral emx-Am can substitute for Drosophila empty spiracles function in head, but not brain development
2010
Hartmann, Beata; Müller, Michael; Hislop, Nikki R.; Roth , Bettina; Tomljenovic, Lucija; Miller, Dav...
Journal Publication Open Access ResearchOnline@JCU
Monophyletic origin of Caryophyllia (Scleractinia, Caryophylliidae), with descriptions of six new species
2010
Kitahara, Marcelo V.; Cairns, Stephen D.; Miller, David J. (2010) 'Monophyletic origin of Caryophyll. Systematics and Biodiversity, 8 (1):91-118. [DOI] ...
Journal Publication ResearchOnline@JCU
A comprehensive phylogenetic analysis of the Scleractinia (Cnidaria, Anthozoa) based on mitochondrial CO1 sequence data
2010
Kitahara, Marcelo V.; Cairns, Stephen D.; Stolarski, Jaroslaw; Blair, David; Miller, David J. (2010)...
Journal Publication Open Access ResearchOnline@JCU
Patterns of gene expression in a scleractinian coral undergoing natural bleaching
2010
Seneca, Francois O.; Forêt , Sylvain; Ball, Eldon E.; Smith-Keune, Carolyn; Miller, David J.; van Op...
Journal Publication ResearchOnline@JCU
The Schistosoma japonicum genome reveals features of host–parasite interplay
2009
Zhou, Yan; Zheng, Huajun; Chen, Yangyi; Zhang, Lei; Wang, Kai; Guo, Jing; Huang, Zhen; Guo, Jing; Hu...
Journal Publication ResearchOnline@JCU
Microarray analysis reveals transcriptional plasticity in the reef building coral Acropora millepora
2009
Bay, Line K.; Ulstrup, Karin E.; Nielsen, H. Bjorn; Jarmer, Hanne; Goffard, Nicolas; Willis, Bette L...
Journal Publication ResearchOnline@JCU
In vitro fertilization efficiency in Acropora digitifera
2009
Iguchi, Akira; Morita, Masaya; Nakajima, Yuichi; Nishikawa, Akira; Miller, David (2009) 'In vitro fe. Zygote, 17 :225...
Journal Publication ResearchOnline@JCU
Differential expression of three galaxin-related genes during settlement and metamorphosis in the scleractinian coral Acropora millepora
2009
Reyes-Bermudez, Alejandro; Lin, Zhiyi; Hayward, David C.; Miller, David J.; Ball, Eldon E. (2009) 'D. ...
Journal Publication ResearchOnline@JCU
In vitro culture of cells derived from larvae of the staghorn coral Acropora millepora
2009
Reyes-Bermudez, A.; Miller, D.J. (2009) 'In vitro culture of cells derived from larvae of the stagho. Coral Reefs, 28 (4):859-864. [DOI] ...
Journal Publication ResearchOnline@JCU
Coral life history and symbiosis: functional genomic resources for two reef building Caribbean corals, Acropora palmata and Montastraea faveolata
2008
Schwarz, Jodi A.; Brokstein, Peter B.; Voolstra, Christian; Terry, Astrid Y.; Miller, David J.; Szma...
Journal Publication Open Access ResearchOnline@JCU
Cryptic complexity captured: the Nematostellar genome reveals its secrets
2008
Miller, David J.; Ball, Eldon E. (2008) 'Cryptic complexity captured: the Nematostellar genome revea. Trends in Genetics, 24 (1):1-4. [DOI] ...
Journal Publication ResearchOnline@JCU
Some rare Indo-Pacific coral species are probable hybrids
2008
Richards, Zoe T.; van Oppen, Madeleine J.H.; Wallace, Carden C.; Willis, Bette L.; Miller, David J. ...
Journal Publication Open Access ResearchOnline@JCU
Diversity and evolution of coral fluorescent proteins
2008
Alieva, Naila O.; Konzen, Karen A.; Field, Steven F.; Meleshkevitch, Ella A.; Hunt, Marguerite E.; B...
Journal Publication Open Access ResearchOnline@JCU
Microarray analysis identifies candidate genes for key roles in coral development
2008
Grasso, Lauretta; Maindonald, John; Rudd, Stephen; Hayward, David C.; Saint, Robert; Miller, David J...
Journal Publication ResearchOnline@JCU
Unexpected diversity of cnidarian integrins: expression during coral gastrulation
2008
Knack, Brent A.; Iguchi, Akira; Shinzato, Chuya; Hayward, David C.; Ball, Eldon E.; Miller, David J....
Journal Publication ResearchOnline@JCU
Sox genes in the coral Acropora millepora: divergent expression patterns reflect differences in developmental mechanisms within the Anthozoa
2008
Shinzato, Chuya; Iguchi, Akira; Hayward, David C.; Technau, Ulrich; Ball, Eldon E.; Miller, David J....
Journal Publication ResearchOnline@JCU
Animal evolution: Trichoplax, trees and taxonomic turmoil
2008
Miller, David J.; Ball, Eldon E. (2008) 'Animal evolution: Trichoplax, trees and taxonomic turmoil'. Current Biology, 18 (21):1003-1005. [DOI] ...
Journal Publication ResearchOnline@JCU
The evolution of immunity: a low-life perspective
2007
Hemmrich, Georg; Miller, David J.; Bosch, Thomas C.G. (2007) 'The evolution of immunity: a low-life . Trends in Immunology, 28 (10):449-454. [DOI] ...
Journal Publication ResearchOnline@JCU
Genomic and microarray approaches to coral reef conservation biology
2007
Forêt, S.; Kassahn, K.S.; Grasso, L.C.; Hayward, D.C.; Iguchi, A.; Ball, E.E.; Miller, D.J. (2007) '....
Journal Publication ResearchOnline@JCU
Implications of cnidarian gene expression patterns for the origins of bilaterality - is the glass half full or half empty?
2007
Ball, Eldon E.; de Jong, Danielle M.; Schierwater, Bernd; Shinzato, Chuya; Hayward, David C.; Miller...
Journal Publication ResearchOnline@JCU
Sequence and expression of four coral G protein-coupled receptors distinct from all classifiable members of the rhodopsin family
2007
Antil, Michel; Hayward, David C.; Miller, David J.; Ball, Eldon E. (2007) 'Sequence and expression o. Gene, 392 (1-2):14-21. [DO ...
Journal Publication ResearchOnline@JCU
Apparent involvement of a β1 type integrin in coral fertilization
2007
Iguchi, Akira; Márquez, Luis M.; Knack, Brent; Shinzato, Chuya; van Oppen, Madeleine J.H.; Willis, B...
Journal Publication ResearchOnline@JCU
Zooxanthellamide D, a polyhydroxy polyene amide from a marine dinoflagellate, and chemotaxonomic perspective of the Symbiodinium polyols
2007
Fukatsu, Takuya; Onodera, Ken-ichi; Ohta, Yuichiro; Oba, Yuichi; Nakamura, Hideshi; Shintani, Tomoak...
Journal Publication ResearchOnline@JCU
Light-responsive cryptochromes from a simple multicellular animal, the coral Acropora millepora
2007
Levy, O.; Appelbaum, L.; Leggat, W.; Gothlif, Y.; Hayward, D.C.; Miller, D.J.; Hoegh-Guldberg, O. (2...
Journal Publication ResearchOnline@JCU
The innate immune repertoire in Cnidaria - ancestral complexity and stochastic gene loss
2007
Miller, David J.; Hemmrich, Georg; Ball, Eldon E.; Hayward, David C.; Khalturin, Konstantin; Funayam...
Journal Publication ResearchOnline@JCU
The role of hybridization in the evolution of reef corals
2006
Willis, Bette L.; van Oppen, Madeleine J.H.; Miller, David J.; Vollmer, Steve V.; Ayre, David J. (20...
Journal Publication ResearchOnline@JCU
Axial patterning and diversification in the Cnidaria predate the Hox System
2006
Kamm, Kai; Schierwater, Bernd; Jakob, Wolfgang; Dellaporta, Stephen L.; Miller, David J. (2006) 'Axi. C,...
Journal Publication ResearchOnline@JCU
Phylogeny: the continuing classificatory conundrum of Chaetognaths
2006
Ball, Eldon E.; Miller, David J. (2006) 'Phylogeny: the continuing classificatory conundrum of Chaet. Current Biology, 16 (15):593-596. [DOI] ...
Journal Publication ResearchOnline@JCU
Components of both major axial patterning systems of the Bilateria are differentially expressed along the primary axis of a 'radiate' animal, the anthozoan cnidarian Acropora millepora.
2006
de Jong, Danielle M.; Hislop, Nikki R.; Hayward, David C.; Reece-Hoyes, John S.; Pontynen, Patricia ...
Journal Publication ResearchOnline@JCU
Animal evolution: the enigmatic phylum Placozoa revisited
2005
Miller, David J.; Ball, Eldon E. (2005) 'Animal evolution: the enigmatic phylum Placozoa revisited'. Current Biology, 15 (1):R26-R28. [DOI] ...
Journal Publication ResearchOnline@JCU
Cnidarians and ancestral genetic complexity in the animal kingdom
2005
Miller, David J.; Ball, Eldon E.; Technau, Ulrich (2005) 'Cnidarians and ancestral genetic complexit. Trends in Genetics, 21 (10):536-539. [DOI] ...
Journal Publication ResearchOnline@JCU
Maintenance of ancestral complexity and non-metazoan genes in two basal cnidarians
2005
Technau, Ulrich; Rudd, Stephen; Maxwell, Peter; Gordon, Paul M.K.; Saina, Michael; Grasso, Lauretta ...
Journal Publication ResearchOnline@JCU
Reconstitution of the peridinin–chlorophyll a protein (PCP): evidence for functional flexibility in chlorophyll binding
2005
Miller, David J.; Catmull, Julian; Puskeiler, Robert; Tweedale, Helen; Sharples, Frank P.; Hiller, R...
Journal Publication ResearchOnline@JCU
Comparative analysis of prothrombin activators from the venom of Australian elapids
2005
St. Pierre, Liam; Masci, Paul P.; Filippovich, Igor; Sorokina, Natasha; Marsh, Neville; Miller, Davi...
Journal Publication ResearchOnline@JCU
Tandem organization of independently duplicated homeobox genes in the basal cnidarian Acropora millepora
2005
Hislop, Nikki R.; de Jong, Danielle; Hayward, David C.; Ball, Eldon E.; Miller, David J. (2005) 'Tan. D,...
Journal Publication ResearchOnline@JCU
Snail expression during embryonic development of the coral Acropora: blurring the diploblast/triplobalst divide
2004
Hayward, David C.; Miller, David J.; Ball, Eldon E. (2004) 'Snail expression during embryonic develo. Development Genes and Evolution, 214 (5):257-260. [DOI] ...
Journal Publication ResearchOnline@JCU
A simple plan: cnidarians and the origins of developmental mechanisms
2004
Ball, Eldon E.; Hayward, David C.; Saint, Robert; Miller, David J. (2004) 'A simple plan: cnidarians. Nature Reviews: Genetic, 5 (8):567-577. [DOI] ...
Journal Publication ResearchOnline@JCU
Unexpected patterns of genetic structuring among locations but not colour morphs in Acropora nasuta (Cnidaria; Scleractinia)
2004
Mackenzie, J.B.; Munday, P.L.; Willis, B.L.; Miller, D.J.; van Oppen, M.J.H. (2004) 'Unexpected patt. 13 (1):9-20. ...
Journal Publication ResearchOnline@JCU
Onchocerca volvulus: expression and immunolocalization of a nematode cathepsin D-loike lysosomal aspartic protease
2004
Jolodar, Abbas; Fischer, Peter; Büttner, Dietrich W.; Miller, David J.; Schmetz, Christel; Brattig, ...
Journal Publication ResearchOnline@JCU
Mutational analysis of the Acropora millepora PaxD paired domain highlights the importance of the linker region for DNA binding
2003
Nordström, Karin; Scholten, Ingo; Nordström, Johanna; Larhammer, Dan; Miller, David (2003) 'Mutation. Gene, 320 ...
Journal Publication ResearchOnline@JCU
EST analysis of the cnidarian Acropora millepora reveals extensive gene loss and rapid sequence divergence in the model invertebrates
2003
Kortschak, R. Daniel; Samuel, Gabrielle; Saint, Robert; Miller, David J. (2003) 'EST analysis of the. Current Biology, 13 (24):2190-21...
Journal Publication ResearchOnline@JCU
A 'fair go' for coral hybridization
2003
Miller, David J.; van Oppen, Madeleine J.H. (2003) 'A 'fair go' for coral hybridization'. 12 (4):805-807. [DOI] ...
Journal Publication ResearchOnline@JCU
A DM domain protein from a coral, Acropora millepora, homologous to proteins important for sex determination
2003
Miller, Steven W.; Hayward, David C.; Bunch, Thomas A.; Miller, David J.; Ball, Eldon E.; Bardwell, ...
Journal Publication ResearchOnline@JCU
Pseudogenes contribute to the extreme diversity of nuclear ribosomal DNA in the hard coral Acropora
2003
Marquez, Luis M.; Miller, David J.; Mackenzie, Jason B.; van Oppen, Madeleine J.H. (2003) 'Pseudogen. Molecul, 20 (7...
Journal Publication ResearchOnline@JCU
DNA-binding characteristics of cnidarian Pax-C and Pax-B proteins in vivo and in vitro: no simple relationship with the Pax-6 and Pax-2/5/8 classes
2003
Plaza, Serge; de Jong, Danielle M.; Gehring, Walter J.; Miller, David J. (2003) 'DNA-binding charact. Journal of Experi, 299B (1):26-35....
Journal Publication ResearchOnline@JCU
Construction and expression of aspartic protease from Onchocerca volvulus as ompA fusion protein in a mutant strain of Salmonella typhimurium
2002
Jolodar, Abbas; Miller, David J. (2002) 'Construction and expression of aspartic protease from Oncho. Genetics and Molecular Biology, 25 (1):97-101. [DOI] ...
Journal Publication ResearchOnline@JCU
Localized expression of a dpp/BMP2/4 ortholog in a coral embryo
2002
Hayward, David C.; Samuel, Gabrielle; Pontynen, Patricia C.; Catmull, Julian; Saint, Robert; Miller,...
Journal Publication ResearchOnline@JCU
Sympatric populations of the highly cross-fertile coral species Acropora hyacinthus and Acropora cytherea are genetically distinct
2002
Marquez, L.M.; van Oppen, M.J.H.; Willis, B.L.; Miller, D.J. (2002) 'Sympatric populations of the hi. 269 (1497):1289-1294. [DOI] ...
Journal Publication ResearchOnline@JCU
Spawning times, reproductive compatibilities and genetic structuring in the Acropora aspera group: evidence for natural hybridization and semi-permeable species boundaries in corals
2002
van Oppen, Madeleine J.H.; Willis, Bette L.; van Rheede, Teun; Miller, David J. (2002) 'Spawning tim. 11 (8):136...
Journal Publication ResearchOnline@JCU
The highly cross-fertile coral species, Acropora hyacinthus and Acropora cytherea, constitute statistically distinguishable lineages
2002
Marquez, L.M.; van Oppen, M.J.H.; Willis, B.L.; Reyes, A.; Miller, D.J. (2002) 'The highly cross-fer. Molecular Ecology, 11 (8):1339-1349...
Journal Publication ResearchOnline@JCU
The mitochondrial genome of Acropora tenuis (Cnidaria: Scleractinia) contains a large group I intron and a candidate control region
2002
van Oppen, Madeleine J. H.; Catmull, Julian; McDonald, Brenda J; Hislop, Nikki R.; Hageman, Paul J.;...
Journal Publication ResearchOnline@JCU
Coral development: from classical embryology to molecular control
2002
Ball, Eldon E.; Hayward, David C.; Reece-Hoyes, John S.; Hislop, Nikki R.; Samuel, Gabrielle; Saint,...
Journal Publication ResearchOnline@JCU
Conservation of a DPP/BMP signaling pathway in the nonbilateral cnidarian Acropora millepora
2001
Samuel, Gabrielle; Miller, David; Saint, Robert (2001) 'Conservation of a DPP/BMP signaling pathway . 3 (4):241-250. [DOI] ...
Journal Publication ResearchOnline@JCU
Patterns of coral-dinoflagellate associations in Acropora: significance of local availability and physiology of Symbiodinium strains and host-symbiont selectivity
2001
van Oppen, Madeleine; Palstra, Friso P.; Piquet, Anouk M.-T.; Miller, David J. (2001) 'Patterns of c. 268 (1478):...
Journal Publication ResearchOnline@JCU
The evolutionary history of the coral genus Acropora (Scleractinia, Cnidaria) based on a mitochondrial and a nuclear marker: reticulation, incomplete lineage sorting, or morphological convergence?
2001
van Oppen, Madeleine J.H.; McDonald, Brenda J.; Willis, Bette; Miller, David J. (2001) 'The evolutio. Molecular , 18 (7):1...
Journal Publication ResearchOnline@JCU
Gene structure and larval expression of cnox-2Am from the coral Acropora millepora
2001
Hayward, David C.; Catmull, Julian; Reece-Hoyes, John S.; Berghammer, Heinrich; Dodd, Heather; Hann,...
Journal Publication ResearchOnline@JCU
Pax gene diversity in the basal cnidarian Acropora millepora (Cnidaria, Anthozoa): Implications for the evolution of the Pax gene family
2000
Miller, David J.; Hayward, David C.; Reece-Hoyes, John S.; Scholten, Ingo; Catmull, Julian; Gehring,...
Journal Publication ResearchOnline@JCU
The ETS/IGS region in a lower animal, the seawhip, Junceella fragilis (Cnidaria: Anthozoa: Octocorallia): compactness, low variation and apparent conservation of a pre-rRNA processing signal with fungi
2000
Chen, C.L.; Miller, David J.; Wei, Nuwei Vivian; Dai, Chang-Feng; Yang, Hsiao-Pei (2000) 'The ETS/IG. Zoologic, 39 (2)...
Journal Publication ResearchOnline@JCU
Examination of species boundaries in the Acropora cervicornis group (Scleractinia, Cnidaria) using nuclear DNA sequence analyses
2000
Van Oppen, M.J.H.; Willis, B.L.; Van Vugt, H.W.J.; Miller, D.J. (2000) 'Examination of species bound. Molecular Ecology, 9 (9):1363-1373. [DOI] ...
Journal Publication ResearchOnline@JCU
The coral Acropora: what it can contribute to our knowledge of metazoan evolution and the evolution of developmental processes
2000
Miller, David J.; Ball, Eldon E. (2000) 'The coral Acropora: what it can contribute to our knowledge. BioEssays, 22 (3):291-296. [DOI] ...
Journal Publication ResearchOnline@JCU
Origin of anterior patterning: how old is our head?
2000
Galliot, Brigitte; Miller, David (2000) 'Origin of anterior patterning: how old is our head?'. Trends in Genetics, 16 (1):1-5. [DOI] ...
Journal Publication ResearchOnline@JCU
Genetic transformation of dinoflagellates (Amphidinium and Symbiodinium): expression of GUS in microalgae using heterologous promoter constructs
1998
Ten Lohuis, Michael R.; Miller, David (1998) 'Genetic transformation of dinoflagellates (Amphidinium. 13 (3):427-435. [DOI] ...
Journal Publication ResearchOnline@JCU
Homeobox genes and the zootype
1993
Miller, David; Miles, Annabel (1993) 'Homeobox genes and the zootype'. Nature, 365 :215-216. [DOI] ...
Journal Publication ResearchOnline@JCU