Jose Domingos

Projects 0
Publications 31
Awards 0

Biography

BSc. Oceanography; MSc. & PhD Aquaculture

I am passionate about the research and development of new aquaculture technologies, as these are key to allowing businesses in the tropics to achieve profitability and sustainability to feed our growing population. My current research area is focused on breeding and propagation of tropical marine food fishes like barramundi, red snapper, cobia and groupers. In particular, I have been sequencing and genotyping thousands of fish from commercial farms in different production environments (RAS, ponds and seacages) to understand the genetic architecture of growth and disease resistance. Through the development of genomic selection algorithms we can predict the genetic merit of broodstock candidates and inform hatcheries which fish to breed so to boost productivity of the farms. I have also helped to design and build, remodel, train staff and/or operate about ten commercial hatcheries, as without proper breeding we cannot advance in selective breeding. 

I have also a long involvement with commercial shrimp and marine finfish operations. Prior to joining the James Cook University (Australia) Aquaculture research team in 2008, I worked as a production manager for several shrimp farms in the South and Northeast of Brazil, where I supervised over 700 hectares of shrimp farming and produced over 4,000 tons of export quality produce. Living and working in several continents and being an aquaculture business insider have given me a unique perspective to understand industry needs while connecting at a deep level with individuals from diverse backgrounds. Trained in Brazil (Oceanography, FURG; MSc. Aquaculture, UFSC) and Australia (PhD Aquaculture Genetics, JCU), I have over 25 years of combined industry, government, and academic background. My academic work is industry-driven, whereby I collaborate with commercial partners in the development of purpose-built production facilities for the use of genetically superior strains. I am also passionate about the training of aquaculture staff and students through hands-on experiences and discoveries that make a difference for the life in the tropics. In my spare time, I share this knowledge to a broader audience via my YouTube channel Hashtag Fish.

Teaching

Research Advisor Accreditation

Advisor Type

Primary


Activities

Associations

Output

Shen, Xueyan; Yáñez, José M.; Gomes, Giana; Poon, Zhi Weng Josiah; Foster, Derick; Alarcon, Jorge; Domingos, Jose A. (2023) 'Comparative gonad transcriptome analysis in cobia (Rachycentron canadum)'. Frontiers in Genetics, 14 . [DOI]
Journal Publication Open Access ResearchOnline@JCU
Poon, Zhi Weng Josiah; Shen, Xueyan; Angelo, Joseph; Terence, Celestine; Chua, Shi Wei Gavin; Domingos, Jose A. (2022) 'Comparative transcriptome analysis reveals factors involved in the influence of dietary astaxanthin on body colouration of Malabar Snapper (Lutjanus malabaricus)'. Aquaculture, 562 . [DOI]
Journal Publication ResearchOnline@JCU
Budd, Alyssa M.; Guppy, Jarrod L.; Thepot, Valentin; Domingos, Jose A.; Jerry, Dean R. (2022) 'Delayed effect of low rearing temperature on gonadal DNA methylation in juvenile barramundi (Lates calcarifer)'. Aquaculture, 560 . [DOI]
Journal Publication ResearchOnline@JCU
Ong, Jun Kiat Edwin; Nair, Thiviya; Ng, Tze Hann; Domingos, Jose A.; Gomes, Giana Bastos (2022) 'Identification of scale drop disease virus based on environment DNA in an aquaculture facility of Singapore'. Aquaculture, 563 . [DOI]
Journal Publication ResearchOnline@JCU
Domingos, Jose A.; Shen, Xueyan; Terence, Celestine; Senapin, Saengchan; Dong, Ha Thanh; Tan, Marie R.; Gibson-Kueh, Susan; Jerry, Dean R. (2021) 'Scale Drop Disease Virus (SDDV) and Lates calcarifer Herpes Virus (LCHV) coinfection downregulate immune-relevant pathways and cause splenic and kidney necrosis in barramundi under commercial farming conditions'. Frontiers in Genetics, 12 . [DOI]
Journal Publication Open Access ResearchOnline@JCU
Nghia, Nguyen Huu; Van, Phan Thi; Giang, Pham Thai; Hanh, Nguyen Thi; St‐Hilaire, Sophie; Domingos, Jose A. (2021) 'Control of Vibrio parahaemolyticus (AHPND strain) and improvement of water quality using nanobubble technology'. Aquaculture Research, 52 (6):2727-2739. [DOI]
Journal Publication Open Access ResearchOnline@JCU
Banh, Quyen Q.T.; Domingos, Jose A.; Pinto, Ricardo C.C.; Nguyen, Kien T.; Jerry, Dean R. (2021) 'Dietary 17 β-oestradiol and 17 α-ethinyloestradiol alter gonadal morphology and gene expression of the two sex-related genes, dmrt1 and cyp19a1a, in juvenile barramundi (Lates calcarifer Bloch)'. Aquaculture Research, 52 (4):1414-1430. [DOI]
Journal Publication Open Access ResearchOnline@JCU
Terence, Celestine; Domingos, Jose A.; Angelo Uichanco, Joseph; Monteil, Yann; Monteil, Loïc; De Braux, Emmanuel; Banh, Quyen Q.T.; Gibson-Kueh, Susan; Jerry, Dean R. (2021) 'Early sex change of barramundi Lates calcarifer farmed in Singapore'. Aquaculture Reports, 20 . [DOI]
Journal Publication Open Access ResearchOnline@JCU
Domingos, Jose A.; Goldsbury, Julie A.; Bastos Gomes, Giana; Smith, Brett G.; Tomlinson, Christopher; Bade, Tim; Sander, Corey; Forrester, Justin; Jerry, Dean R. (2021) 'Genotype by environment interactions of harvest growth traits for barramundi (Lates calcarifer) commercially farmed in marine vs. freshwater conditions'. Aquaculture, 532 . [DOI]
Journal Publication ResearchOnline@JCU
Banh, Quyen Q. T.; Guppy, Jarrod L.; Domingos, Jose A.; Budd, Alyssa M.; Pinto, Ricardo C. C.; Marc, Adrien F.; Jerry, Dean R. (2021) 'Induction of precocious females in the protandrous barramundi (Lates calcarifer) through implants containing 17β-estradiol - effects on gonadal morphology, gene expression and DNA methylation of key sex genes'. Aquaculture, 539 . [DOI]
Journal Publication Open Access ResearchOnline@JCU
Tsang, Hin Hung; Domingos, Jose A.; Westaway, Jacob A.F.; Kam, Maximilian H.Y.; Huerlimann, Roger; Bastos Gomes, Giana (2021) 'Digital droplet PCR-based environmental DNA tool for monitoring Cryptocaryon irritans in a marine fish farm from Hong Kong'. Diversity, 13 (8). [DOI]
Journal Publication Open Access ResearchOnline@JCU
Mangott, A.; Nappi, J.; Delli Paoli Carini, A.; Goncalves, P.; Hua, K.; Domingos, J.A.; de Nys, R.; Thomas, T. (2020) 'Ulva lactuca as a functional ingredient and water bioremediator positively influences the hepatopancreas and water microbiota in the rearing of Litopenaeus vannamei'. Algal Research, 51 . [DOI]
Journal Publication ResearchOnline@JCU
Meemetta, Watcharachai; Domingos, Jose A.; Dong, Ha Thanh; Senapin, Saengchan (2020) 'Development of a SYBR Green quantitative PCR assay for detection of Lates calcarifer herpesvirus (LCHV) in farmed barramundi'. Journal of Virological Methods, 285 . [DOI]
Journal Publication ResearchOnline@JCU
Gomes, Giana Bastos; Hutson, Kate S.; Domingos, Jose A.; Infante Villamil, Sandra; Huerlimann, Roger; Miller, Terrence L.; Jerry, Dean (2019) 'Parasitic protozoan interactions with bacterial microbiome in a tropical fish farm'. Aquaculture, 502 :196-201. [DOI]
Journal Publication ResearchOnline@JCU
Munday, Philip L.; Schunter, Celia; Allan, Bridie M.J.; Nicol, Simon; Pether, Stephen M.J.; Pope, Stephen; Ravasi, Timothy; Setiawan, Alvin N.; Smith, Neville; Domingos, Jose A. (2019) 'Testing the adaptive potential of yellowtail kingfish to ocean warming and acidification'. Frontiers in Ecology and Evolution, 7 . [DOI]
Journal Publication Open Access ResearchOnline@JCU
Domingos, Jose A.; Budd, Alyssa M.; Banh, Quyen Q.; Goldsbury, Julie A.; Zenger, Kyall R.; Jerry, Dean R. (2018) 'Sex-specific dmrt1 and cyp19a1 methylation and alternative splicing in gonads of the protandrous hermaphrodite barramundi'. PLoS ONE, 13 (9). [DOI]
Journal Publication Open Access ResearchOnline@JCU
Konovalov, Dmitry A.; Saleh, Alzayat; Domingos, Jose A.; White, Ron D.; Jerry, Dean R. (2018) 'Estimating mass of harvested Asian seabass Lates calcarifer from images'. World Journal of Engineering and Technology, 6 (3):15-23. [DOI]
Journal Publication Open Access ResearchOnline@JCU
Banh, Quyen Q.; Domingos, Jose A.; Zenger, Kyall R.; Jerry, Dean R. (2017) 'Morphological changes and regulation of the genes dmrt1 and cyp11b during the sex differentiation of barramundi (Lates calcarifer Bloch)'. Aquaculture, 479 :75-84. [DOI]
Journal Publication ResearchOnline@JCU
Bastos Gomes, Giana; Hutson, Kate S.; Domingos, Jose A.; Chung, Catherine; Hayward, Scott; Miller, Terrance L.; Jerry, Dean R. (2017) 'Use of environmental DNA (eDNA) and water quality data to predict protozoan parasites outbreaks in fish farms'. Aquaculture, 479 :467-473. [DOI]
Journal Publication ResearchOnline@JCU
Munday, Philip L.; Donelson, Jennifer M.; Domingos, Jose A. (2016) 'Potential for adaptation to climate change in a coral reef fish'. Global Change Biology, 23 (1):307-317. [DOI]
Journal Publication ResearchOnline@JCU
Budd, Alyssa M.; Banh, Quyen Q.; Domingos, Jose A.; Jerry, Dean R. (2015) 'Sex control in fish: approaches, challenges and opportunities for aquaculture'. Journal of Marine Science and Engineering, 3 (2):329-355. [DOI]
Journal Publication Open Access ResearchOnline@JCU
Domingos, Jose A.; Smith-Keune, Carolyn; Harrison, Paul; Jerry, Dean R. (2014) 'Early prediction of long-term family growth performance based on cellular processes: a tool to expedite the establishment of superior foundation broodstock in breeding programs'. Aquaculture, 428-429 :88-96. [DOI]
Journal Publication ResearchOnline@JCU
Domingos, Jose A.; Smith-Keune, Carolyn; Jerry, Dean R. (2014) 'Fate of genetic diversity within and between generations and implications for DNA parentage analysis in selective breeding of mass spawners: a case study of commercially farmed barramundi, Lates calcarifer'. Aquaculture, 424-425 :174-182. [DOI]
Journal Publication ResearchOnline@JCU
Loughnan, Shannon R.; Domingos, Jose A.; Smith-Keune, Carolyn; Forrester, Justin P.; Jerry, Dean R.; Beheregaray, Luciano B.; Robinson, Nicholas A. (2013) 'Broodstock contribution after mass spawning and size grading in barramundi (Lates calcarifer, Bloch)'. Aquaculture, 404-405 :139-149. [DOI]
Journal Publication ResearchOnline@JCU
Domingos, Jose A.; Smith-Keune, Carolyn; Robinson, Nicholas; Loughnan, Shannon; Harrison, Paul; Jerry, Dean R. (2013) 'Heritability of harvest growth traits and genotype–environment interactions in barramundi, Lates calcarifer (Bloch)'. Aquaculture, 402-403 :66-75. [DOI]
Journal Publication ResearchOnline@JCU
Domingos, J.A.; Fromm, P.; Smith-Keune, C.; Jerry, D.R. (2012) 'A robust flow-cytometric protocol for assessing growth rate of hatchery-reared barramundi Lates calcarifer larvae'. Journal of Fish Biology, 80 (6):2253-2266. [DOI]
Journal Publication ResearchOnline@JCU
Bastos Gomes, Giana; Domingos, José Antonio Santos; Oliveira, Karine Kelly Cavalcanti; Mendes, Paulo de Paula; Da Silva, Veronica Arns; Mendes, Emiko Shinozaki (2010) 'Diagnosis of necrotizing hepatopancreatitis in Pacific White Shrimp, Litopenaeus vannamei, through wet mount, histopathology and PCR techniques'. Journal of the World Aquaculture Society, 41 (5):816-822. [DOI]
Journal Publication ResearchOnline@JCU
Domingos, Jose A.; Zenger, Kyall R.; Jerry, Dean R. (2015) 'Whole-genome shotgun sequence assembly enables rapid gene characterization in the tropical fish barramundi, Lates calcarifer' Animal Genetics, 46 (4) :468-469. [DOI]
Journal Contribution ResearchOnline@JCU
Konovalov, Dmitry A.; Saleh, Alzayat; Efremova, Dina B.; Domingos, Jose A.; Jerry, Dean R. (2019) 2019 Digital Image Computing: Techniques and Applications (DICTA) Automatic weight estimation of harvested fish from images Perth, WA, Australia, [DOI]
Conference Publication ResearchOnline@JCU
Konovalov, D.A.; Domingos, J.A.; White, R.D.; Jerry, D.R. (2018) Proceedings of the 2nd International Conference on Advances in Image Processing - ICAIP '18 Automatic scaling of fish images Chengdu, China, [DOI]
Conference Publication ResearchOnline@JCU
Konovalov, D.A.; Domingos, J.A.; Bajema, C.; White, R.D.; Jerry, D.R. (2017) ICAIP 2017: International Conference on Advances in Image Processing Ruler detection for automatic scaling of fish images Bangkok, Thailand, [DOI]
Conference Publication ResearchOnline@JCU