reseracher placholder

David Miller

Projects

0

Publications

152

Awards

0

Teaching

Research Advisor Accreditation
Advisor Type

Mentor

Current JCU Research Students
Impact of Water Quality on Physiological Performance of the Coral Acropora Millepora
Doctorate by Research - time-based
Characterization of the CpG methylation distribution and patterns in the mushroom coral Heliofungia actiniformis
Doctorate by Research - time-based
Coral and microbial interactions during progression of black band disease lesions
Doctorate by Research - time-based
Insights into the molecular bases of coral-specific traits
Doctorate by Research - time-based
Role of Hybridization in Evolutionary History of Scleractinian Corals
Doctorate by Research - time-based
The molecular bases of regeneration and the heat shock response that underlines coral bleaching
Doctorate by Research - time-based
Characterisation of host-specific bacterial symbionts of corals
Doctorate by Research - time-based
Completed JCU Research Students
Biogeography, reproductive biology and early development in scleractinian corals
Doctorate by Research - time-based- 2022
Exploring the potential function of dimethylsulfoniopropionate and its by-product acrylate within the coral holobiont
Masters by Research - time-based- 2023
Diversity, Phylogeography and Taxonomy of Hard-Corals in the genus Porites
Doctorate by Research - time-based- 2021
Genome wide analysis of natural selection in thermally tolerant coral communities from North Western Australia
Doctorate by Research - time-based- 2020
Molecular insights into a novel coral model, Heliofungia actiniformis
Doctorate by Research - time-based- 2022
Investigating receptors and signalling pathways of coral settlement and metamorphosis using proteomics,transcriptomics and phylogenetics;;
Doctorate by Research - time-based- 2023
Dimethylsulphoniopropionate (DMSP) metabolism within the coral holobiont
Doctorate by Research - time-based- 2021
Characterizing the associated bacterial community in the model Alcyoniid Lobophytum pauciflorum
Doctorate by Research - time-based- 2021
Host-microbe symbiosis and coevolution in coral reef invertebrates
Doctorate by Research - time-based- 2022
Non-contact competition between soft and hard corals: a transcriptomic perspective.
Doctorate by Research - time-based- 2018
Identifying antimicrobial peptides in genomes using machine learning methods
Doctorate by Research - time-based- 2022

Output

Bathymetric evolution of black corals through deep time
2023
Horowitz, Jeremy; Quattrini, Andrea M.; Brugler, Mercer R.; Miller, David J.; Pahang, Kristina; Brid...
Journal Publication ResearchOnline@JCU
Wound healing and regeneration in the reef building coral Acropora millepora
2023
Xu, Jane; Mead, Oliver; Moya, Aurelie; Caglar, Cüneyt; Miller, David J.; Adamski, Marcin; Adamska, M...
Journal Publication ResearchOnline@JCU
Research priorities for the sustainability of coral-rich western Pacific seascapes
2023
Cumming, Graeme S.; Adamska, Maja; Barnes, Michele L.; Barnett, Jon; Bellwood, David R.; Cinner, Jos...
Journal Publication ResearchOnline@JCU
Multiple opsins in a reef-building coral, Acropora millepora
2023
Mason, Benjamin M.; Koyanagi, Mitsumasa; Sugihara, Tomohiro; Iwasaki, Makoto; Slepak, Vladlen; Mille...
Journal Publication ResearchOnline@JCU
Energy allocation trade-offs as a function of age in fungiid corals
2023
Grinblat, Mila; Eyal-Shaham, Lee; Eyal, Gal; Ben-Zvi, Or; Harii, Saki; Morita, Masaya; Sakai, Kazuhi...
Journal Publication ResearchOnline@JCU
Validation of key sponge symbiont pathways using genome-centric metatranscriptomics
2023
O'Brien, Paul A.; Tan, Shangjin; Frade, Pedro R.; Robbins, Steven J.; Engelberts, J. Pamela; Bell, S...
Journal Publication ResearchOnline@JCU
Newly Discovered Peptides from the Coral Heliofungia actiniformis Show Structural and Functional Diversity
2022
Schmidt, Casey A.; Cooke, Ira; Wilson, David T.; Miller, David J.; Peigneur, Steve; Tytgat, Jan; Fie...
Journal Publication ResearchOnline@JCU
Evolutionary Responses of a Reef-building Coral to Climate Change at the End of the Last Glacial Maximum
2022
Zhang, Jia; Richards, Zoe T.; Adam, Arne A.S.; Chan, Cheong Xin; Shinzato, Chuya; Gilmour, James; Th...
Journal Publication ResearchOnline@JCU
The Role of DNA Methylation in Genome Defense in Cnidaria and Other Invertebrates
2022
Ying, Hua; Hayward, David C.; Klimovich, Alexander; Bosch, Thomas C.U.; Baldassarre, Laura; Neeman, ...
Journal Publication ResearchOnline@JCU
Urbanization comprehensively impairs biological rhythms in coral holobionts
2022
Rosenberg, Yaeli; Simon-Blecher, Noa; Lalzar, Maya; Yam, Ruth; Shemesh, Aldo; Alon, Shahar; Perna, G...
Journal Publication ResearchOnline@JCU
DMSP production by coral-associated bacteria
2022
Kuek, Felicity; Motti, Cherie; Zhang, Jia; Cooke, Ira R.; Todd, Jonathan D.; Miller, David J.; Bourn...
Journal Publication ResearchOnline@JCU
The significance of genotypic diversity in coral competitive interaction: a transcriptomic perspective
2021
Andrade Rodriguez, N.; Moya, A.; Jones, R.; Miller, D.J.; Cooke, I. (2021) 'The significance of geno. Frontiers in Ecology a, 9 . [DOI] ...
Journal Publication ResearchOnline@JCU
Broad scale proteomic analysis of heat-destabilised symbiosis in the hard coral acropora millepora
2021
Petrou, K.; Nunn, B. L.; Padula, M. P.; Miller, D. J.; Nielsen, D. A. (2021) 'Broad scale proteomic . Scientific Reports, 11 :19061-19061. ...
Journal Publication ResearchOnline@JCU
Testing cophylogeny between coral reef invertebrates and their bacterial and archaeal symbionts
2021
O'Brien, Paul A.; Andreakis, Nikolaos; Tan, Shangjin; Miller, David; Webster, Nicole S.; Zhang, Guoj...
Journal Publication ResearchOnline@JCU
Biogeography, reproductive biology and phylogenetic divergence within the Fungiidae (mushroom corals)
2021
Grinblat, Mila; Cooke, Ira; Shlesinger, Tom; Ben-Zvi, Or; Loya, Yossi; Miller, David J.; Cowman, Pet...
Journal Publication ResearchOnline@JCU
High regenerative capacity is a general feature within colonial dendrophylliid corals (Anthozoa, Scleractinia)
2021
Pereira Luz, Bruna Louise; Miller, David; Kitahara, Marcelo Visentini (2021) 'High regenerative capa. Journal of Experimen, 336 (3):281-292. ...
Journal Publication ResearchOnline@JCU
AmAMP1 from Acropora millepora and damicornin define a family of coral-specific antimicrobial peptides related to the Shk toxins of sea anemones
2021
Mason, B.; Cooke, I.; Moya, A.; Augustin, R.; Lin, M.F.; Satoh, N.; Bosch, T.C.G.; Bourne, D.G.; Hay...
Journal Publication ResearchOnline@JCU
Conservation and turnover of miRNAs and their highly complementary targets in early branching animals
2021
Praher, Daniela; Zimmermann, Bob; Dnyansagar, Rohit; Miller, David J.; Moya, Aurelie; Modepalli, Ven...
Journal Publication ResearchOnline@JCU
Genomic signatures in the coral holobiont reveal host adaptations driven by Holocene climate change and reef specific symbionts
2020
Cooke, Ira; Ying, Hua; Forêt, Sylvain; Bongaerts, Pim; Strugnell, Jan M.; Simakov, Oleg; Zhang, Jia;...
Journal Publication ResearchOnline@JCU
Comparative transcriptomic analyses of Chromera and Symbiodiniaceae
2020
Mohamed, Amin R.; Chan, Cheong Xin; Ragan, Mark A.; Zhang, Jia; Cooke, Ira; Ball, Eldon E.; Miller, ...
Journal Publication ResearchOnline@JCU
What lies beneath: Hydra provides cnidarian perspectives into the evolution of FGFR docking proteins
2020
Suryawanshi, Ashwini; Schaefer, Karolin; Holz, Oliver; Apel, David; Lange, Ellen; Hayward, David C.;...
Journal Publication ResearchOnline@JCU
An enhanced target-enrichment bait set for Hexacorallia provides phylogenomic resolution of the staghorn corals (Acroporidae) and close relatives
2020
Cowman, Peter F.; Quattrini, Andrea M.; Bridge, Tom C.L.; Watkins-Colwell, Gregory J.; Fadli, Nur; G...
Journal Publication ResearchOnline@JCU
Identification and characterization of a peptide from the stony coral Heliofungia actiniformis
2020
Schmidt, Casey A.; Wilson, David T.; Cooke, Ira; Potriquet, Jeremy; Tungatt, Katie; Muruganandah, Vi...
Journal Publication ResearchOnline@JCU
Early eukaryotic origins and metazoan elaboration of MAPR family proteins
2020
Hehenberger, Elisabeth; Eitel, Michael; Fortunato, Sofia A.V.; Miller, David J.; Keeling, Patrick J....
Journal Publication ResearchOnline@JCU
Diverse coral reef invertebrates exhibit patterns of phylosymbiosis
2020
O'Brien, Paul A.; Tan, Shangjin; Yang, Chentao; Frade, Pedro R.; Andreakis, Nikolaos; Smith, Hillary...
Journal Publication ResearchOnline@JCU
ampir: an R package for fast genome-wide prediction of antimicrobial peptides
2020
Fingerhut, Legana C. H. W.; Miller, David J.; Strugnell, Jan M.; Daly, Norelle L.; Cooke, Ira R. (20...
Journal Publication ResearchOnline@JCU
Dual RNA-sequencing analyses of a coral and its native symbiont during the establishment of symbiosis
2020
Mohamed, Amin R.; Andrade, Natalia; Moya, Aurelie; Chan, Cheong Xin; Negri, Andrew P.; Bourne, David...
Journal Publication ResearchOnline@JCU
A field and video annotation guide for baited remote underwater stereo-video surveys of demersal fish assemblages
2020
Langlois, Tim; Goetze, Jordan; Bond, Todd; Monk, Jacquomo; Abesamis, Rene A.; Asher, Jacob; Barrett,...
Journal Publication ResearchOnline@JCU
Molecular techniques and their limitations shape our view of the holobiont
2019
Cooke, Ira; Mead, Oliver; Whalen, Casey; Boote, Chloe; Moya, Aurelie; Ying, Hua; Robbins, Steven; St...
Journal Publication ResearchOnline@JCU
The whole-genome sequence of the coral Acropora millepora
2019
Ying, Hua; Hayward, David C.; Cooke, Ira; Wang, Weiwen; Moya, Aurelie; Siemering, Kirby R.; Sprungal...
Journal Publication ResearchOnline@JCU
Host-microbe coevolution: applying evidence from model systems to complex marine invertebrate holobionts
2019
O'Brien, Paul; Webster, Nicole S.; Miller, David J.; Bourne, David G. (2019) 'Host-microbe coevoluti. mBio, 10 (1). [DOI] ...
Journal Publication ResearchOnline@JCU
Resolving structure and function of metaorganisms through a holistic framework combining reductionist and integrative approaches
2019
Jaspers, Cornelia; Fraune, Sebastian; Arnold, A. Elizabeth; Miller, David J.; Bosch, Thomas C.G.; Vo...
Journal Publication ResearchOnline@JCU
Transcriptomic analysis reveals protein homeostasis breakdown in the coral Acropora millepora during hypo-saline stress
2019
Aguilar, Catalina; Raina, Jean-Baptiste; Fôret, Sylvain; Hayward, David C.; Lapeyre, Bruno; Bourne, ...
Journal Publication ResearchOnline@JCU
Transcriptomic analyses highlight the likely metabolic consequences of colonization of a cnidarian host by native or non-native Symbiodinium species
2019
Lin, Mei-Fang; Takahashi, Shunichi; Foret, Sylvain; Davy, Simon K.; Miller, David J. (2019) 'Transcr. Biolo, 8 (...
Journal Publication ResearchOnline@JCU
Finding Nemo's genes: a chromosome-scale reference assembly of the genome of the orange clownfish Amphiprion percula
2019
Lehmann, Robert; Lightfoot, Damien; Schunter, Celia; Michell, Craig T.; Ohyanagi, Hajime; Mineta, Ka...
Journal Publication ResearchOnline@JCU
A genomic view of the reef-building coral Porites lutea and its microbial symbionts
2019
Robbins, Steven J.; Singleton, Caitlin M.; Chan, Cheong Xin; Messer, Lauren F.; Geers, Aileen U.; Yi...
Journal Publication ResearchOnline@JCU
Expression of the neuropeptides RFamide and LWamide during development of the coral Acropora millepora in relation to settlement and metamorphosis
2019
Attenborough, Rosalind M.F.; Hayward, David C.; Wiedemann, Ursula; Foret, Sylvain; Miller, David J.;...
Journal Publication ResearchOnline@JCU
Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis
2018
Liu, Huanle; Stephens, Timothy G.; González-Pech, Raúl A.; Beltran, Victor H.; Lapeyre, Bruno; Bonga...
Journal Publication ResearchOnline@JCU
Setting the pace: host rhythmic behaviour and gene expression patterns in the facultatively symbiotic cnidarian Aiptasia are determined largely by Symbiodinium
2018
Sorek, Michal; Schnytzer, Yisrael; Ben-Asher, Hiba Waldman; Caspi, Vered Chalifa; Chen, Chii-Shiarng...
Journal Publication ResearchOnline@JCU
Deciphering the nature of the coral-Chromera association
2018
Mohamed, Amin R.; Cumbo, Vivian R.; Harii, Saki; Shinzato, Chuya; Chan, Cheong Xin; Ragan, Mark A.; ...
Journal Publication ResearchOnline@JCU
Universal target-enrichment baits for anthozoan (Cnidaria) phylogenomics: new approaches to long-standing problems
2018
Quattrini, Andrea M.; Faircloth, Brant C.; Dueñas, Luisa F.; Bridge, Tom C.L.; Brugler, Mercer R.; C...
Journal Publication ResearchOnline@JCU
Comparative genomics reveals the distinct evolutionary trajectories of the robust and complex coral lineages
2018
Ying, Hua; Cooke, Ira; Sprungala, Susanne; Wang, Weiwen; Hayward, David C.; Tang, Yurong; Huttley, G...
Journal Publication ResearchOnline@JCU
Transcriptomic analysis of the response of Acropora millepora to hypo-osmotic stress provides insights into DMSP biosynthesis by corals
2017
Aguilar, Catalina; Raina, Jean-Baptiste; Motti, Cherie A.; Foret, Sylvain; Hayward, David C.; Lapeyr...
Journal Publication ResearchOnline@JCU
Analyses of corallimorpharian transcriptomes provide new perspectives on the evolution of calcification in the Scleractinia (corals)
2017
Lin, Mei-Fang; Moya, Aurelie; Ying, Hua; Chen, Chaolun Allen; Cooke, Ira; Ball, Eldon E.; Forȇt, Syl...
Journal Publication ResearchOnline@JCU
Rapid adaptive responses to climate change in corals
2017
Torda, Gergely; Donelson, Jennifer M.; Aranda, Manuel; Barshis, Daniel J.; Bay, Line; Berumen, Micha...
Journal Publication ResearchOnline@JCU
Loss and gain of group I introns in the mitochondrial cox1 gene of the scleractinia (cnidaria; anthozoa)
2017
Chuang, Yaoyang; Kitahara, Marcelo; Fukami, Hironobu; Tracey, Dianne; Miller, David J.; Chen, Chaolu...
Journal Publication ResearchOnline@JCU
The microbiome of the octocoral Lobophytum pauciflorum: minor differences between sexes and resilience to short-term stress
2017
Wessels, Wiebke; Sprungala, Susanne; Watson, Sue-Ann; Miller, David J.; Bourne, David G. (2017) 'The. F,...
Journal Publication ResearchOnline@JCU
Functional conservation of the apoptotic machinery from coral to man: the diverse and complex Bcl-2 and caspase repertoires of Acropora millepora
2016
Moya, Aurelie; Sakamaki, Kazuhiro; Mason, Benjamin M.; Huisman, Lotte; Forêt, Sylvain; Weiss, Yvonne...
Journal Publication ResearchOnline@JCU
Complete mitochondrial genome sequences of Atlantic representatives of the invasive Pacific coral species Tubastraea coccinea and T. tagusensis (Scleractinia, Dendrophylliidae): implications for species identification
2016
Capel, K.C.C.; Migotto, A.E.; Zilberberg, C.; Lin, M.F.; Forsman, Z.; Miller, D.J.; Kitahara, M.V. (...
Journal Publication ResearchOnline@JCU
Near-future pH conditions severely impact calcification, metabolism and the nervous system in the pteropod Heliconoides inflatus
2016
Moya, Aurelie; Howes, Ella L.; Lacoue-Labarthe, Thomas; Foret, Sylvain; Hanna, Bishoy; Medina, Mónic...
Journal Publication ResearchOnline@JCU
The transcriptomic response of the coral Acropora digitifera to a competent Symbiodinium strain: the symbiosome as an arrested early phagosome
2016
Mohamed, A.R.; Cumbo, V.; Harii, S.; Shinzato, C.; Chan, C.X.; Ragan, M.A.; Bourne, D.G.; Willis, B....
Journal Publication ResearchOnline@JCU
Corallimorpharians are not "naked corals": insights into relationships between Scleractinia and Corallimorpharia from phylogenomic analyses
2016
Lin, Mei Fang; Chou, Wen Hwa; Kitahara, Marcelo V.; Chen, Chao Lun Allen; Miller, David John; Forêt,...
Journal Publication ResearchOnline@JCU
The ReFuGe 2020 Consortium: using "omics" approaches to explore the adaptability and resilience of coral holobionts to environmental change
2015
Voolstra, Christian R.; Miller, David J.; Ragan, Mark A.; Hoffmann, Ary A.; Hoegh-Guldberg, Ove; Bou...
Journal Publication ResearchOnline@JCU
Rapid acclimation of juvenile corals to CO2-mediated acidification by upregulation of heat shock protein and Bcl-2 genes
2015
Moya, A.; Huisman, L.; Fêret, S.; Gattuso, J-P.; Hayward, D.C.; Ball, E.E.; Miller, D.J. (2015) 'Rap. M,...
Journal Publication ResearchOnline@JCU
The organizer in evolution–gastrulation and organizer gene expression highlight the importance of Brachyury during development of the coral, Acropora millepora
2015
Hayward, David C.; Grasso, Lauretta C.; Saint, Robert; Miller, David J.; Ball, Eldon E. (2015) 'The . De, ...
Journal Publication ResearchOnline@JCU
Transcriptomic differences between day and night in Acropora millepora provide new insights into metabolite exchange and light-enhanced calcification in corals
2015
Bertucci, A.; Forêt, S.; Ball, E.E.; Miller, D.J. (2015) 'Transcriptomic differences between day and. Molecular Ecology, 24 (17):4489-4504. [DOI] ...
Journal Publication ResearchOnline@JCU
Evolutionary analyses of caspase-8 and its paralogs: deep origins of the apoptotic signaling pathways
2015
Sakamaki, Kazuhiro; Imai, Kenichiro; Tomii, Kentaro; Miller, David J. (2015) 'Evolutionary analyses . BioEssays, 37 (7):767-776. [ ...
Journal Publication ResearchOnline@JCU
Host coenzyme Q redox state is an early biomarker of thermal stress in the coral Acropora millepora
2015
Lutz, Adrian; Raina, Jean-Baptiste; Motti, Cherie A.; Miller, David J.; van Oppen, Madeleine J.H. (2...
Journal Publication ResearchOnline@JCU
Simultaneous determination of coenzyme Q and plastoquinone redox states in the coral-Symbiodinium symbiosis during thermally induced bleaching
2014
Lutz, Adrian; Motti, Cherie A.; Freckelton, Mamie L.; Van Oppen, Madeleine J.H.; Miller, David J.; D...
Journal Publication ResearchOnline@JCU
How do environmental factors influence life cycles and development? An experimental framework for early-diverging metazoans
2014
Bosch, Thomas C.G.; Adamska, Maja; Augustin, René; Domazet-Loso, Tomislav; Foret, Sylvain; Fraune, S...
Journal Publication ResearchOnline@JCU
The apoptotic initiator Caspase-8: its functional ubiquity and genetic diversity during animal evolution
2014
Sakamaki, Kazuhiro; Shimizu, Kouhei; Iwata, Hiroaki; Imai, Kenichiro; Satou, Yutaka; Funayama, Norik...
Journal Publication ResearchOnline@JCU
The "naked coral" hypothesis revisited: evidence for and against Scleractinian monophyly
2014
Kitahara, Marcelo V.; Lin, Mei-Fang; Forêt, Sylvain; Huttley, Gavin; Miller, David J.; Chen, Chaolun...
Journal Publication ResearchOnline@JCU
Mitochondrial genome rearrangements in the Scleractinia/Corallimorpharia complex: implications for coral phylogeny
2014
Lin, Mei-Fang; Kitahara, Marcelo Visentini; Luo, Haiwei; Tracey, Dianne; Geller, Jonathan; Fukami, H...
Journal Publication ResearchOnline@JCU
The acute transcriptional response of the coral Acropora millepora to immune challenge: expression of GiMAP/IAN genes links the innate immune responses of corals with those of mammals and plants
2013
Weiss, Yvonne; Forêt, Sylvain; Hayward, David C.; Ainsworth, Tracy; King, Rob; Ball, Eldon E.; Mille...
Journal Publication ResearchOnline@JCU
Deltocyathiidae, an early-diverging family of Robust corals (Anthozoa, Scleractinia)
2013
Kitahara, Marcelo V.; Cairns, Stephen D.; Stolarski, Jaroslaw; Miller, David J. (2013) 'Deltocyathii. Zoologica , 42 (2):2...
Journal Publication ResearchOnline@JCU
The skeletal proteome of the coral Acropora millepora: the evolution of calcification by co-option and domain shuffling
2013
Ramos-Silva, Paula; Kaandorp, Jaap; Huisman, Lotte; Marie, Benjamin; Zanella-Cléon, Isabelle; Guicha...
Journal Publication ResearchOnline@JCU
The complex NOD-like receptor repertoire of the coral Acropora digitifera includes novel domain combinations
2013
Hamada, Mayuko; Shoguchi, Eiichi; Shinzato, Chuya; Kawashima, Takeshi; Miller, David J.; Satoh, Nori...
Journal Publication ResearchOnline@JCU
Molecular phylogenetics of geographically restricted Acropora species: implications for threatened species conservation
2013
Richards, Z.T.; Miller, D.J.; Wallace, C.C. (2013) 'Molecular phylogenetics of geographically restri. Molecular Phylogenetics and Evolution, 69 (3):837-851. [DOI] ...
Journal Publication ResearchOnline@JCU
A "neural" enzyme in nonbilaterian animals and algae: preneural origins for peptidylglycine α-amidating monooxygenase
2012
Attenborough, Rosalind M.F.; Hayward, David C.; V. Kitahara, Marcelo; Miller, David J.; Ball, Eldon ...
Journal Publication ResearchOnline@JCU
The first modern solitary Agariciidae (Anthozoa, Scleractinia) revealed by molecular and microstructural analysis
2012
Kitahara, Marcelo V.; Stolarski, Jaroslaw; Cairns, Stephen D.; Benzoni, Francesca; Stake, Joel L.; M...
Journal Publication ResearchOnline@JCU
Novel organization of the mitochondrial genome in the deep-sea coral, Madrepora oculata (Hexacorallia, Scleractinia, Oculinidae) and its taxonomic implications
2012
Lin, Mei-Fang; Kitahara, Marcelo Visentini; Tachikawa, Hiroyuki; Fukami, Hironobu; Miller, David Joh...
Journal Publication ResearchOnline@JCU
Mitogenome polymorphism in a single branch sample revealed by SOLiD deep sequencing of the Lophelia pertusa coral genome
2012
Emblem, Ase; Karlsen, Bard Ove; Evertsen, Jussi; Miller, David J.; Moum, Truls; Johansen, Steinar D....
Journal Publication ResearchOnline@JCU
Expression of putative immune response genes during early ontogeny in the coral Acropora millepora
2012
Puill-Stephan, Eneour; Seneca, François O.; Miller, David J.; van Oppen, Madeleine J.H.; Willis, Bet...
Journal Publication ResearchOnline@JCU
The neuronal calcium sensor protein acrocalcin: a potential target of calmodulin regulation during development in the coral Acropora millepora
2012
Reyes-Bermudez, Alejandro; Miller, David J.; Sprungala, Susanne (2012) 'The neuronal calcium sensor . PLoS ONE, 7 (12):1-8. [DOI] ...
Journal Publication ResearchOnline@JCU
Coral thermal tolerance: tuning gene expression to resist thermal stress
2012
Bellantuono, Anthony J.; Granados-Cifuentes, Camila; Miller, David J.; Hoegh-Guldberg, Ove; Rodrigue...
Journal Publication ResearchOnline@JCU
Whole transcriptome analysis of the coral Acropora millepora reveals complex responses to CO2-driven acidification during the initiation of calcification
2012
Moya, A.; Huisman, L.; Ball, E.E.; Hayward, D.C.; Grasso, L.C.; Chua, C.M.; Woo, H.N.; Gattuso, J.-P...
Journal Publication ResearchOnline@JCU
Major cellular and physiological impacts of ocean acidification on a reef building coral
2012
Kaniewska, Paulina; Campbell, Paul R.; Kline, David I.; Rodriguez-Lanetty, Mauricio; Miller, David J...
Journal Publication ResearchOnline@JCU
Phylogenomics reveals an anomalous distribution of USP genes in metazoans
2011
Forêt, Sylvain; Seneca, François; De Jong, Danielle; Bieller, Annette; Hemmrich, Georg; Augustin, Re...
Journal Publication ResearchOnline@JCU
The ancient evolutionary origins of Scleractinia revealed by azooxanthellate corals
2011
Stolarski, Jarosław; Kitahara, Marcelo V.; Miller, David J.; Cairns, Stephen D.; Mazur, Maciej; Meib...
Journal Publication ResearchOnline@JCU
Using the Acropora digitifera genome to understand coral responses to environmental change
2011
Shinzato, Chuya; Shoguchi, Eiichi; Kawashimi, Takeshi; Hamada, Mayuko; Hisata, Kanako; Tanaka, Makik...
Journal Publication ResearchOnline@JCU
Complex diel cycles of gene expression in coral-algal symbiosis
2011
Levy, O.; Kaniewska, P.; Alon, S.; Eisenberg, E.; Karako-Lampert , S.; Bay, L.K.; Reef, R.; Rodrigue...
Journal Publication ResearchOnline@JCU
Defining the tipping point. A complex cellular life/death balance in corals in response to stress
2011
Ainsworth, T.D.; Wasmund, K.; Ukani, L.; Seneca, F.; Yellowlees, D.; Miller, D.; Leggat, W. (2011) '....
Journal Publication ResearchOnline@JCU
Defining the origins of the NOD-like receptor system at the base of animal evolution
2011
Lange, Christina; Hemmrich, Georg; Klostermeier, Ulrich C. ; López-Quintero, Javier A. ; Miller, Dav...
Journal Publication ResearchOnline@JCU
Identification of fast-evolving genes in the scleractinian Coral Acropora using comparative EST analysis
2011
Iguchi, Akira; Shinzato, Chuya ; Forêt, Sylvain; Miller, David J. (2011) 'Identification of fast-evo. PLoS ONE, 6 (6):1-6. [DOI] ...
Journal Publication ResearchOnline@JCU
The biology of coral metamorphosis: molecular responses of larvae to inducers of settlement and metamorphosis
2011
Grasso, L.C.; Negri, A.P.; Fôret, S.; Saint, R.; Hayward, D.C.; Miller, D.J.; Ball, E.E. (2011) 'The. D,...
Journal Publication ResearchOnline@JCU
Differential gene expression at coral settlement and metamorphosis: a subtractive hybridization study
2011
Hayward, David C.; Hetherington, Suzannah; Behm, Carolyn A.; Grasso, Lauretta C.; Forêt, Sylvain; Mi...
Journal Publication ResearchOnline@JCU
Patterns of gene expression in a scleractinian coral undergoing natural bleaching
2010
Seneca, Francois O.; Forêt , Sylvain; Ball, Eldon E.; Smith-Keune, Carolyn; Miller, David J.; van Op...
Journal Publication ResearchOnline@JCU
Putting placozoans on the (phylogeographic) map
2010
Ball, Eldon E.; Miller, David J. (2010) 'Putting placozoans on the (phylogeographic) map'. Molecular Ecology, 19 (11):2181-2183. [DOI] ...
Journal Publication ResearchOnline@JCU
New tricks with old genes: the genetic bases of novel cnidarian traits
2010
Forêt, Sylvain; Knack, Brent; Houliston, Evelyn; Momose, Tsuyoshi; Manuel, Michael; Quéinnec, Eric; ...
Journal Publication ResearchOnline@JCU
Coral emx-Am can substitute for Drosophila empty spiracles function in head, but not brain development
2010
Hartmann, Beata; Müller, Michael; Hislop, Nikki R.; Roth , Bettina; Tomljenovic, Lucija; Miller, Dav...
Journal Publication ResearchOnline@JCU
Monophyletic origin of Caryophyllia (Scleractinia, Caryophylliidae), with descriptions of six new species
2010
Kitahara, Marcelo V.; Cairns, Stephen D.; Miller, David J. (2010) 'Monophyletic origin of Caryophyll. Systematics and Biodiversity, 8 (1):91-118. [DOI] ...
Journal Publication ResearchOnline@JCU
Archetypal elkhorn coral discovered in the Pacific Ocean
2010
Richards, Zoe T.; Wallace, Carden C.; Miller, David J. (2010) 'Archetypal elkhorn coral discovered i. Systematics and Biodiversity, 8 (2):281-288. [DOI] ...
Journal Publication ResearchOnline@JCU
A comprehensive phylogenetic analysis of the Scleractinia (Cnidaria, Anthozoa) based on mitochondrial CO1 sequence data
2010
Kitahara, Marcelo V.; Cairns, Stephen D.; Stolarski, Jaroslaw; Blair, David; Miller, David J. (2010)...
Journal Publication ResearchOnline@JCU
Microarray analysis reveals transcriptional plasticity in the reef building coral Acropora millepora
2009
Bay, Line K.; Ulstrup, Karin E.; Nielsen, H. Bjorn; Jarmer, Hanne; Goffard, Nicolas; Willis, Bette L...
Journal Publication ResearchOnline@JCU
In vitro fertilization efficiency in Acropora digitifera
2009
Iguchi, Akira; Morita, Masaya; Nakajima, Yuichi; Nishikawa, Akira; Miller, David (2009) 'In vitro fe. Zygote, 17 :225...
Journal Publication ResearchOnline@JCU
Differential expression of three galaxin-related genes during settlement and metamorphosis in the scleractinian coral Acropora millepora
2009
Reyes-Bermudez, Alejandro; Lin, Zhiyi; Hayward, David C.; Miller, David J.; Ball, Eldon E. (2009) 'D. ...
Journal Publication ResearchOnline@JCU
In vitro culture of cells derived from larvae of the staghorn coral Acropora millepora
2009
Reyes-Bermudez, A.; Miller, D.J. (2009) 'In vitro culture of cells derived from larvae of the stagho. Coral Reefs, 28 (4):859-864. [DOI] ...
Journal Publication ResearchOnline@JCU
The Schistosoma japonicum genome reveals features of host–parasite interplay
2009
Zhou, Yan; Zheng, Huajun; Chen, Yangyi; Zhang, Lei; Wang, Kai; Guo, Jing; Huang, Zhen; Guo, Jing; Hu...
Journal Publication ResearchOnline@JCU
Animal evolution: Trichoplax, trees and taxonomic turmoil
2008
Miller, David J.; Ball, Eldon E. (2008) 'Animal evolution: Trichoplax, trees and taxonomic turmoil'. Current Biology, 18 (21):1003-1005. [DOI] ...
Journal Publication ResearchOnline@JCU
Coral life history and symbiosis: functional genomic resources for two reef building Caribbean corals, Acropora palmata and Montastraea faveolata
2008
Schwarz, Jodi A.; Brokstein, Peter B.; Voolstra, Christian; Terry, Astrid Y.; Miller, David J.; Szma...
Journal Publication ResearchOnline@JCU
Cryptic complexity captured: the Nematostellar genome reveals its secrets
2008
Miller, David J.; Ball, Eldon E. (2008) 'Cryptic complexity captured: the Nematostellar genome revea. Trends in Genetics, 24 (1):1-4. [DOI] ...
Journal Publication ResearchOnline@JCU
Some rare Indo-Pacific coral species are probable hybrids
2008
Richards, Zoe T.; van Oppen, Madeleine J.H.; Wallace, Carden C.; Willis, Bette L.; Miller, David J. ...
Journal Publication ResearchOnline@JCU
Diversity and evolution of coral fluorescent proteins
2008
Alieva, Naila O.; Konzen, Karen A.; Field, Steven F.; Meleshkevitch, Ella A.; Hunt, Marguerite E.; B...
Journal Publication ResearchOnline@JCU
Microarray analysis identifies candidate genes for key roles in coral development
2008
Grasso, Lauretta; Maindonald, John; Rudd, Stephen; Hayward, David C.; Saint, Robert; Miller, David J...
Journal Publication ResearchOnline@JCU
Unexpected diversity of cnidarian integrins: expression during coral gastrulation
2008
Knack, Brent A.; Iguchi, Akira; Shinzato, Chuya; Hayward, David C.; Ball, Eldon E.; Miller, David J....
Journal Publication ResearchOnline@JCU
Sox genes in the coral Acropora millepora: divergent expression patterns reflect differences in developmental mechanisms within the Anthozoa
2008
Shinzato, Chuya; Iguchi, Akira; Hayward, David C.; Technau, Ulrich; Ball, Eldon E.; Miller, David J....
Journal Publication ResearchOnline@JCU
Apparent involvement of a β1 type integrin in coral fertilization
2007
Iguchi, Akira; Márquez, Luis M.; Knack, Brent; Shinzato, Chuya; van Oppen, Madeleine J.H.; Willis, B...
Journal Publication ResearchOnline@JCU
Zooxanthellamide D, a polyhydroxy polyene amide from a marine dinoflagellate, and chemotaxonomic perspective of the Symbiodinium polyols
2007
Fukatsu, Takuya; Onodera, Ken-ichi; Ohta, Yuichiro; Oba, Yuichi; Nakamura, Hideshi; Shintani, Tomoak...
Journal Publication ResearchOnline@JCU
Light-responsive cryptochromes from a simple multicellular animal, the coral Acropora millepora
2007
Levy, O.; Appelbaum, L.; Leggat, W.; Gothlif, Y.; Hayward, D.C.; Miller, D.J.; Hoegh-Guldberg, O. (2...
Journal Publication ResearchOnline@JCU
The innate immune repertoire in Cnidaria - ancestral complexity and stochastic gene loss
2007
Miller, David J.; Hemmrich, Georg; Ball, Eldon E.; Hayward, David C.; Khalturin, Konstantin; Funayam...
Journal Publication ResearchOnline@JCU
The evolution of immunity: a low-life perspective
2007
Hemmrich, Georg; Miller, David J.; Bosch, Thomas C.G. (2007) 'The evolution of immunity: a low-life . Trends in Immunology, 28 (10):449-454. [DOI] ...
Journal Publication ResearchOnline@JCU
Genomic and microarray approaches to coral reef conservation biology
2007
Forêt, S.; Kassahn, K.S.; Grasso, L.C.; Hayward, D.C.; Iguchi, A.; Ball, E.E.; Miller, D.J. (2007) '....
Journal Publication ResearchOnline@JCU
Implications of cnidarian gene expression patterns for the origins of bilaterality - is the glass half full or half empty?
2007
Ball, Eldon E.; de Jong, Danielle M.; Schierwater, Bernd; Shinzato, Chuya; Hayward, David C.; Miller...
Journal Publication ResearchOnline@JCU
Sequence and expression of four coral G protein-coupled receptors distinct from all classifiable members of the rhodopsin family
2007
Antil, Michel; Hayward, David C.; Miller, David J.; Ball, Eldon E. (2007) 'Sequence and expression o. Gene, 392 (1-2):14-21. [DO ...
Journal Publication ResearchOnline@JCU
The role of hybridization in the evolution of reef corals
2006
Willis, Bette L.; van Oppen, Madeleine J.H.; Miller, David J.; Vollmer, Steve V.; Ayre, David J. (20...
Journal Publication ResearchOnline@JCU
Axial patterning and diversification in the Cnidaria predate the Hox System
2006
Kamm, Kai; Schierwater, Bernd; Jakob, Wolfgang; Dellaporta, Stephen L.; Miller, David J. (2006) 'Axi. C,...
Journal Publication ResearchOnline@JCU
Phylogeny: the continuing classificatory conundrum of Chaetognaths
2006
Ball, Eldon E.; Miller, David J. (2006) 'Phylogeny: the continuing classificatory conundrum of Chaet. Current Biology, 16 (15):593-596. [DOI] ...
Journal Publication ResearchOnline@JCU
Components of both major axial patterning systems of the Bilateria are differentially expressed along the primary axis of a 'radiate' animal, the anthozoan cnidarian Acropora millepora.
2006
de Jong, Danielle M.; Hislop, Nikki R.; Hayward, David C.; Reece-Hoyes, John S.; Pontynen, Patricia ...
Journal Publication ResearchOnline@JCU
Maintenance of ancestral complexity and non-metazoan genes in two basal cnidarians
2005
Technau, Ulrich; Rudd, Stephen; Maxwell, Peter; Gordon, Paul M.K.; Saina, Michael; Grasso, Lauretta ...
Journal Publication ResearchOnline@JCU
Reconstitution of the peridinin–chlorophyll a protein (PCP): evidence for functional flexibility in chlorophyll binding
2005
Miller, David J.; Catmull, Julian; Puskeiler, Robert; Tweedale, Helen; Sharples, Frank P.; Hiller, R...
Journal Publication ResearchOnline@JCU
Comparative analysis of prothrombin activators from the venom of Australian elapids
2005
St. Pierre, Liam; Masci, Paul P.; Filippovich, Igor; Sorokina, Natasha; Marsh, Neville; Miller, Davi...
Journal Publication ResearchOnline@JCU
Tandem organization of independently duplicated homeobox genes in the basal cnidarian Acropora millepora
2005
Hislop, Nikki R.; de Jong, Danielle; Hayward, David C.; Ball, Eldon E.; Miller, David J. (2005) 'Tan. D,...
Journal Publication ResearchOnline@JCU
Animal evolution: the enigmatic phylum Placozoa revisited
2005
Miller, David J.; Ball, Eldon E. (2005) 'Animal evolution: the enigmatic phylum Placozoa revisited'. Current Biology, 15 (1):R26-R28. [DOI] ...
Journal Publication ResearchOnline@JCU
Cnidarians and ancestral genetic complexity in the animal kingdom
2005
Miller, David J.; Ball, Eldon E.; Technau, Ulrich (2005) 'Cnidarians and ancestral genetic complexit. Trends in Genetics, 21 (10):536-539. [DOI] ...
Journal Publication ResearchOnline@JCU
A simple plan: cnidarians and the origins of developmental mechanisms
2004
Ball, Eldon E.; Hayward, David C.; Saint, Robert; Miller, David J. (2004) 'A simple plan: cnidarians. 5 (8):567-577. [DOI] ...
Journal Publication ResearchOnline@JCU
Unexpected patterns of genetic structuring among locations but not colour morphs in Acropora nasuta (Cnidaria; Scleractinia)
2004
Mackenzie, J.B.; Munday, P.L.; Willis, B.L.; Miller, D.J.; van Oppen, M.J.H. (2004) 'Unexpected patt. Molecular Eco, 13 (1):9-20...
Journal Publication ResearchOnline@JCU
Onchocerca volvulus: expression and immunolocalization of a nematode cathepsin D-loike lysosomal aspartic protease
2004
Jolodar, Abbas; Fischer, Peter; Büttner, Dietrich W.; Miller, David J.; Schmetz, Christel; Brattig, ...
Journal Publication ResearchOnline@JCU
Snail expression during embryonic development of the coral Acropora: blurring the diploblast/triplobalst divide
2004
Hayward, David C.; Miller, David J.; Ball, Eldon E. (2004) 'Snail expression during embryonic develo. Development Genes and Evolution, 214 (5):257-260. [DOI] ...
Journal Publication ResearchOnline@JCU
EST analysis of the cnidarian Acropora millepora reveals extensive gene loss and rapid sequence divergence in the model invertebrates
2003
Kortschak, R. Daniel; Samuel, Gabrielle; Saint, Robert; Miller, David J. (2003) 'EST analysis of the. Current Biology, 13 (24):2190-21...
Journal Publication ResearchOnline@JCU
A 'fair go' for coral hybridization
2003
Miller, David J.; van Oppen, Madeleine J.H. (2003) 'A 'fair go' for coral hybridization'. Molecular Ecology, 12 (4):805-807. [DOI] ...
Journal Publication ResearchOnline@JCU
A DM domain protein from a coral, Acropora millepora, homologous to proteins important for sex determination
2003
Miller, Steven W.; Hayward, David C.; Bunch, Thomas A.; Miller, David J.; Ball, Eldon E.; Bardwell, ...
Journal Publication ResearchOnline@JCU
Pseudogenes contribute to the extreme diversity of nuclear ribosomal DNA in the hard coral Acropora
2003
Marquez, Luis M.; Miller, David J.; Mackenzie, Jason B.; van Oppen, Madeleine J.H. (2003) 'Pseudogen. Molecul, 20 (7...
Journal Publication ResearchOnline@JCU
DNA-binding characteristics of cnidarian Pax-C and Pax-B proteins in vivo and in vitro: no simple relationship with the Pax-6 and Pax-2/5/8 classes
2003
Plaza, Serge; de Jong, Danielle M.; Gehring, Walter J.; Miller, David J. (2003) 'DNA-binding charact. 299B (1):26-35. ...
Journal Publication ResearchOnline@JCU
Mutational analysis of the Acropora millepora PaxD paired domain highlights the importance of the linker region for DNA binding
2003
Nordström, Karin; Scholten, Ingo; Nordström, Johanna; Larhammer, Dan; Miller, David (2003) 'Mutation. Gene, 320 ...
Journal Publication ResearchOnline@JCU
Spawning times, reproductive compatibilities and genetic structuring in the Acropora aspera group: evidence for natural hybridization and semi-permeable species boundaries in corals
2002
van Oppen, Madeleine J.H.; Willis, Bette L.; van Rheede, Teun; Miller, David J. (2002) 'Spawning tim. Molecular , 11 (8):1...
Journal Publication ResearchOnline@JCU
Localized expression of a dpp/BMP2/4 ortholog in a coral embryo
2002
Hayward, David C.; Samuel, Gabrielle; Pontynen, Patricia C.; Catmull, Julian; Saint, Robert; Miller,...
Journal Publication ResearchOnline@JCU
The highly cross-fertile coral species, Acropora hyacinthus and Acropora cytherea, constitute statistically distinguishable lineages
2002
Marquez, L.M.; van Oppen, M.J.H.; Willis, B.L.; Reyes, A.; Miller, D.J. (2002) 'The highly cross-fer. Molecular Ecology, 11 (8):1339-1349...
Journal Publication ResearchOnline@JCU
The mitochondrial genome of Acropora tenuis (Cnidaria: Scleractinia) contains a large group I intron and a candidate control region
2002
van Oppen, Madeleine J. H.; Catmull, Julian; McDonald, Brenda J; Hislop, Nikki R.; Hageman, Paul J.;...
Journal Publication ResearchOnline@JCU
Coral development: from classical embryology to molecular control
2002
Ball, Eldon E.; Hayward, David C.; Reece-Hoyes, John S.; Hislop, Nikki R.; Samuel, Gabrielle; Saint,...
Journal Publication ResearchOnline@JCU
Construction and expression of aspartic protease from Onchocerca volvulus as ompA fusion protein in a mutant strain of Salmonella typhimurium
2002
Jolodar, Abbas; Miller, David J. (2002) 'Construction and expression of aspartic protease from Oncho. 25 (1):97-101. [DOI] ...
Journal Publication ResearchOnline@JCU
Sympatric populations of the highly cross-fertile coral species Acropora hyacinthus and Acropora cytherea are genetically distinct
2002
Marquez, L.M.; van Oppen, M.J.H.; Willis, B.L.; Miller, D.J. (2002) 'Sympatric populations of the hi. 269 (1497):1289-1294. [DOI] ...
Journal Publication ResearchOnline@JCU
The evolutionary history of the coral genus Acropora (Scleractinia, Cnidaria) based on a mitochondrial and a nuclear marker: reticulation, incomplete lineage sorting, or morphological convergence?
2001
van Oppen, Madeleine J.H.; McDonald, Brenda J.; Willis, Bette; Miller, David J. (2001) 'The evolutio. Molecular , 18 (7):1...
Journal Publication ResearchOnline@JCU
Gene structure and larval expression of cnox-2Am from the coral Acropora millepora
2001
Hayward, David C.; Catmull, Julian; Reece-Hoyes, John S.; Berghammer, Heinrich; Dodd, Heather; Hann,...
Journal Publication ResearchOnline@JCU
Patterns of coral-dinoflagellate associations in Acropora: significance of local availability and physiology of Symbiodinium strains and host-symbiont selectivity
2001
van Oppen, Madeleine; Palstra, Friso P.; Piquet, Anouk M.-T.; Miller, David J. (2001) 'Patterns of c. 268 (1478):...
Journal Publication ResearchOnline@JCU
Conservation of a DPP/BMP signaling pathway in the nonbilateral cnidarian Acropora millepora
2001
Samuel, Gabrielle; Miller, David; Saint, Robert (2001) 'Conservation of a DPP/BMP signaling pathway . 3 (4):241-250. [DOI] ...
Journal Publication ResearchOnline@JCU
Pax gene diversity in the basal cnidarian Acropora millepora (Cnidaria, Anthozoa): Implications for the evolution of the Pax gene family
2000
Miller, David J.; Hayward, David C.; Reece-Hoyes, John S.; Scholten, Ingo; Catmull, Julian; Gehring,...
Journal Publication ResearchOnline@JCU
The ETS/IGS region in a lower animal, the seawhip, Junceella fragilis (Cnidaria: Anthozoa: Octocorallia): compactness, low variation and apparent conservation of a pre-rRNA processing signal with fungi
2000
Chen, C.L.; Miller, David J.; Wei, Nuwei Vivian; Dai, Chang-Feng; Yang, Hsiao-Pei (2000) 'The ETS/IG. Zoologic, 39 (2)...
Journal Publication ResearchOnline@JCU
Examination of species boundaries in the Acropora cervicornis group (Scleractinia, Cnidaria) using nuclear DNA sequence analyses
2000
Van Oppen, M.J.H.; Willis, B.L.; Van Vugt, H.W.J.; Miller, D.J. (2000) 'Examination of species bound. Molecular Ecology, 9 (9):1363-1373. [DOI] ...
Journal Publication ResearchOnline@JCU
The coral Acropora: what it can contribute to our knowledge of metazoan evolution and the evolution of developmental processes
2000
Miller, David J.; Ball, Eldon E. (2000) 'The coral Acropora: what it can contribute to our knowledge. BioEssays, 22 (3):291-296. [DOI] ...
Journal Publication ResearchOnline@JCU
Origin of anterior patterning: how old is our head?
2000
Galliot, Brigitte; Miller, David (2000) 'Origin of anterior patterning: how old is our head?'. Trends in Genetics, 16 (1):1-5. [DOI] ...
Journal Publication ResearchOnline@JCU
Genetic transformation of dinoflagellates (Amphidinium and Symbiodinium): expression of GUS in microalgae using heterologous promoter constructs
1998
Ten Lohuis, Michael R.; Miller, David (1998) 'Genetic transformation of dinoflagellates (Amphidinium. 13 (3):427-435. [DOI] ...
Journal Publication ResearchOnline@JCU
Homeobox genes and the zootype
1993
Miller, David; Miles, Annabel (1993) 'Homeobox genes and the zootype'. Nature, 365 :215-216. [DOI] ...
Journal Publication ResearchOnline@JCU