Projects 0
Publications 15
Awards 0

Biography

Andrew Calcino is a lecturer in bioinformatics and a member of Prof Matt Field's team, which uses bioinformatics to address a range of issues pertaining to human health, through the lens of genetic variation.

Andrew's current research focus is on the development of single cell sequencing data analysis pathways for determining the cellular and genetic impacts of various autoimmune diseases. He also uses a range of technologies for identifying structural variants that may be implicated in disease. In addition to his research, Andrew is the course coordinator for the second year bioinformatics subject, "Decoding DNA" which will be offered for the first time in trimester 2025.

Andrew completed his PhD at the University of Queensland under the supervision of Prof Bernie Degnan where he studied the early origins of the metazoan small interfering RNA pathways (miRNAs, piRNAs and endo-siRNAs). Following this he accepted a position at the University of Vienna, Austria, under the supervision of Univ.-Prof. DDr. Andreas Wanninger where he worked on the evolutionary genomics of molluscs with a focus on the origins and impacts of large genomic structural variations. Andrew commenced his position at JCU in 2022 and is fascinated by genetic variation and its role in both evolution and human disease.

Output

Dukda, Sonam; Kumar, Manoharan; Calcino, Andrew; Schmitz, Ulf; Field, Matt A. (2025) 'Increasing pathogenic germline variant diagnosis rates in precision medicine: current best practices and future opportunities'. Human Genomics, 19 (1). [DOI]
Journal Publication Open Access ResearchOnline@JCU
Calcino, Andrew; Cooke, Ira; Cowman, Peter; Higgie, Megan; Massault, Cecile; Schmitz, Ulf; Whittaker, Maxine; Field, Matt A. (2024) 'Harnessing genomic technologies for one health solutions in the tropics'. Globalization and Health, 20 . [DOI]
Journal Publication Open Access ResearchOnline@JCU
Moxon, Joseph V.; Calcino, Andrew; Kraeuter, Ann-Katrin; Phie, James; Anderson, Georgina; Standley, Glenys; Sealey, Cindy; Jones, Rhondda E.; Field, Matt A.; Golledge, Jonathan (2023) 'A case–control comparison of acute-phase peripheral blood gene expression in participants diagnosed with minor ischaemic stroke or stroke mimics'. Human Genomics, 17 . [DOI]
Journal Publication Open Access ResearchOnline@JCU
Zieger, Elisabeth; Schwaha, Thomas; Burger, Katharina; Bergheim, Ina; Wanninger, Andreas; Calcino, Andrew D. (2022) 'Midbody-Localized Aquaporin Mediates Intercellular Lumen Expansion During Early Cleavage of an Invasive Freshwater Bivalve'. Frontiers in Cell and Developmental Biology, 10 . [DOI]
Journal Publication Open Access ResearchOnline@JCU
Schulreich, Stephan, M.; Salamanca-Diaz, David A.; Zieger, Elisabeth; Calcino, Andrew; Wanninger, Andreas (2022) 'A mosaic of conserved and novel modes of gene expression and morphogenesis in mesoderm and muscle formation of a larval bivalve'. Organisms Diversity and Evolution, 22 :893-913. [DOI]
Journal Publication Open Access ResearchOnline@JCU
Saadi, Ahmed J.; Bibermair, Julian; Kocot, Kevin M.; Roberts, Nickellaus G.; Hirose, Masato; Calcino, Andrew; Baranyi, Christian; Chaichana, Ratcha; Wood, Timothy S.; Schwaha, Thomas (2022) 'Phylogenomics reveals deep relationships and diversification within phylactolaemate bryozoans'. Proceedings of the Royal Society of London Series B, Biological Sciences, 289 (1986). [DOI]
Journal Publication Open Access ResearchOnline@JCU
Sachslehner, Attila; Zieger, Elisabeth; Calcino, Andrew; Wanninger, Andreas (2021) 'HES and Mox genes are expressed during early mesoderm formation in a mollusk with putative ancestral features'. Scientific Reports, 11 . [DOI]
Journal Publication Open Access ResearchOnline@JCU
Zieger, Elisabeth; Robert, Nicolas S.M.; Calcino, Andrew; Wanninger, Andreas (2021) 'Ancestral Role of Ecdysis-Related Neuropeptides in Animal Life Cycle Transitions'. Current Biology, 31 (1):207-213. [DOI]
Journal Publication ResearchOnline@JCU
Salamanca-Díaz, David A.; Calcino, Andrew D.; de Oliveira, André L.; Wanninger, Andreas (2021) 'Non-collinear Hox gene expression in bivalves and the evolution of morphological novelties in mollusks'. Scientific Reports, 11 . [DOI]
Journal Publication Open Access ResearchOnline@JCU
Calcino, Andrew D.; Kenny, Nathan J.; Gerdol, Marco (2021) 'Single individual structural variant detection uncovers widespread hemizygosity in molluscs'. Philosophical Transactions of the Royal Society B: Biological Sciences, 376 (1825). [DOI]
Journal Publication ResearchOnline@JCU
De Oliveira, A.L.; Calcino, A.; Wanninger, A. (2019) 'Extensive conservation of the proneuropeptide and peptide prohormone complement in mollusks'. Scientific Reports, 9 . [DOI]
Journal Publication Open Access ResearchOnline@JCU
Calcino, Andrew D.; de Oliveira, André Luiz; Simakov, Oleg; Schwaha, Thomas; Zieger, Elisabeth; Wollesen, Tim; Wanninger, Andreas (2019) 'The quagga mussel genome and the evolution of freshwater tolerance'. DNA Research, 26 (5):411-422. [DOI]
Journal Publication Open Access ResearchOnline@JCU
de Oliveira, AndréLuiz; Calcino, Andrew; Wanninger, Andreas (2019) 'Ancient origins of arthropod moulting pathway components'. eLife, 8 . [DOI]
Journal Publication Open Access ResearchOnline@JCU
Calcino, Andrew; Fernandez-Valverde, Selene L.; Taft, Ryan J.; Degnan, Bernard M. (2018) 'Diverse RNA interference strategies in early-branching metazoans'. BMC Evolutionary Biology, 18 . [DOI]
Journal Publication Open Access ResearchOnline@JCU
Srivastava, Mansi; Simakov, Oleg; Chapman, Jarrod; Fahey, Bryony; Gauthier, Marie E.A.; Mitros, Therese; Richards, Gemma S.; Conaco, Cecilia; Dacre, Michael; Hellsten, Uffe; Larroux, Claire; Putnam, Nicholas H; Stanke, Mario; Adamska, Maja; Darling, Aaron; Degnan, Sandie M.; Oakley, Todd H.; Plachetzki, David C.; Zhai, Yufeng; Adamski, Marcin; Calcino, Andrew; Cummins, Scott F.; Goodstein, David M.; Harris, Christina; Jackson, Daniel J.; Leys, Sally P.; Shu, Shengqiang; Woodcroft, Ben J.; Vervoort, Michel; Kosik, Kenneth S.; Manning, Gerard; Degnan, Bernard M.; Rokhsar, Daniel S. (2010) 'The Amphimedon queenslandica genome and the evolution of animal complexity'. Nature, 466 :720-726. [DOI]
Journal Publication ResearchOnline@JCU