Projects

10

Publications

23

Awards

16


Biography

Dr. Xueyan Shen obtained her M.Sc in Aquaculture and Ph.D. in Biochemistry and Molecular Biology from the Ocean University of China in 2004 and 2007, respectively. After that, she started her Postdoctoral work on maintenance of genomic resources for the National BioResource Project Medak in NIBB (Okazaki, Japan). From 2010, she worked in the Temasek Life Sciences Laboratory (TLL), Singapore, where as a Research Fellow, she led several research teams towards increasing Singapore’s food fish supply through application of aquaculture genomics R&D. She has now joined James Cook University in Singapore where she will continue to apply her state-of-the-art teaching and genetic research approaches to help Singapore as well as other Asia counties achieve their aquaculture related food security strategy.

Research Focus

Dr. Shen’s research focus is on the development of “robust” aquaculture strains to boost seafood production. She has conducted genomics-assisted selection on two economically important fish, namely Asian seabass/barramundi and Mozambique tilapia, and also the ornamental fish Asian arowana. Specific areas of her research interest include: 1) Developing genomic resources and genetic tools like whole genome sequencing, high-density SNP arrays, etc., to support selective breeding; 2) Exploring genetic basis of important traits (growth, disease resistance) using RNA sequencing, QTL mapping, GWAS and genomic selection; 3) Conducting functional feed trials and specific pathogen tests to evaluating feed additives' impact on fish immunity; 4) Investigating nutrition, gene expression, gut microbiome and immunity in various fish species using omics approaches. As an Associate Professor at JCU Singapore, Dr. Shen is keen to continue to collaborate with partners from commercial industry, government universities/institutes to create ‘State of the art’genomic platforms to further improve the productivity and quality of food fish species.

Impact of Research

Her research into the genetic improvement of Asian seabass, Red Snapper and Tilapia have allowed for a ‘quantum leap’ in generation of more superior broodstock leading to more efficient and greater productivity of foodfish products. In addition, tools she has developed will be easily applicable and adaptable to the aquaculture systems of other tropical marine fish species, advancing their production systems from the current most traditional methods into modern, science-assisted aquaculture.

Research

Projects

Teaching

Research Advisor Accreditation
Advisor Type

Primary

Research Advisor Accreditation
Role

Chair; Independent Academic


Taught Modules
Current JCU Research Students
Molecular Epidemiology: Mapping pathogen trends and host immunity to inform disease management in Tropical Aquaculture food fish species.
Doctor of Philosophy (Agriculture, Environmental and Related Studies)
The Epidemiology of 'Scale Drop Disease' in Farmed Lates Calcarifer in Singapore
Doctor of Philosophy (Agriculture, Environmental and Related Studies)
Genomic selection of barramundi (Lates calcarifer) for improved scale drop disease virus (SDDV) resistance, growth, and fillet traits
Doctor of Philosophy (Agriculture, Environmental and Related Studies)
Completed JCU Research Students
Biomarkers as early indicators of disease in farmed Asian seabass (lates calcarifer)
Doctor of Philosophy (Agriculture, Environmental and Related Studies)- 2025
Nutritional requirements and optimised feed development for juvenile Malabar snapper (Lutjanus malabaricus)
Doctor of Philosophy (Agriculture, Environmental and Related Studies)- 2025

Activities

Media
Awards
Associations

Output

Poon, Zhi Weng Josiah; Vu, Nguyen Thanh; Shen, Xueyan; Gibson-Kueh, Susan; Carrai, Maura; Nelson, Sa...
Journal Publication Open Access ResearchOnline@JCU
Vu, Nguyen Thanh; Shen, Xueyan; Kueh, Susan; Carrai, Maura; Terence, Celestine; Poon, Zhi Weng Josia...
Journal Publication Open Access ResearchOnline@JCU
Shen, Xueyan; Gibson-Kueh, Susan; Nelson, Sarah Priyanka; Poon, Zhi Weng Josiah; Terence, Celestine;...
Journal Publication Open Access ResearchOnline@JCU
Shen, Xueyan; Yu, Xiong Da; Xie, Shangzhe; Hsu, Chia Da; Domingos, Jose A.; Gibson-Kueh, Susan (2026...
Journal Publication Open Access ResearchOnline@JCU
Liang, Bing; Jerry, Dean R.; Nguyen, Vu; Shen, Xueyan; Koh, Joyce; Terence, Celestine; Nayfa, Maria;...
Journal Publication Open Access ResearchOnline@JCU
Poon, Zhi Weng Josiah; Vu, Nguyen Thanh; Shen, Xueyan; Gibson-Kueh, Susan; Carrai, Maura; Nelson, Sa...
Journal Publication Open Access ResearchOnline@JCU
Sean, Afifah; Lim, Tzer Shyun; Domingos, Jose A.; Uichanco, Joseph A.; Shen, Xueyan; Gibson-Kueh, Su...
Journal Publication Open Access ResearchOnline@JCU
Terence, Celestine; Poon, Zhi Weng Josiah; Senapin, Saengchan; Dong, Ha Thanh; Clarke, Shannon M.; B...
Journal Publication Open Access ResearchOnline@JCU
Ngoh, Si Yan; Shen, Xueyan; Nankervis, Leo; Chia, Isaiah; Hua, Katheline (2025) 'Evaluation of nutri. Aquaculture, 600 . [DOI] ...
Journal Publication Open Access ResearchOnline@JCU
Ngoh, Si Yan; Shen, Xueyan; Nankervis, Leo; Hua, Katheline (2024) 'Evaluation of Energy Utilisation . Aquaculture Nutrition, 2024 (1). [DOI] ...
Journal Publication Open Access ResearchOnline@JCU
Chew, Xian Zhe; Carrai, Maura; Shen, Xueyan; Gibson-Kueh, Susan (2024) 'Impact of transport conditio. Journal of Fish Diseases, 47 (8). [DOI] ...
Journal Publication Open Access ResearchOnline@JCU
Liang, Bing; Jerry, Dean R.; Shen, Xueyan; Koh, Joyce; Terence, Celestine; Nayfa, Maria G.; Nguyen, ...
Journal Publication Open Access ResearchOnline@JCU
Shen, Xueyan; Hu, Jie; Yáñez, José M.; Bastos Gomes, Giana; Poon, Zhi Weng Josiah; Foster, Derick; A...
Journal Publication Open Access ResearchOnline@JCU
Shen, Xueyan; Yáñez, José M.; Gomes, Giana; Poon, Zhi Weng Josiah; Foster, Derick; Alarcon, Jorge; D...
Journal Publication Open Access ResearchOnline@JCU
Shen, Xueyan; Niu, Yong Chao; Uichanco, Joseph Angelo V.; Phua, Norman; Bhandare, Pranjali; Thevasag...
Journal Publication Open Access ResearchOnline@JCU
Chew, Xian Zhe; Gibson-Kueh, Susan; Jerry, Dean R.; Shen, Xueyan (2023) 'Comparison of intestinal ba. Aquaculture, 572 . [DOI] ...
Journal Publication Open Access ResearchOnline@JCU
Poon, Zhi Weng Josiah; Shen, Xueyan; Angelo, Joseph; Terence, Celestine; Chua, Shi Wei Gavin; Doming...
Journal Publication ResearchOnline@JCU
Gibson-Kueh, Susan; Terence, Celestine; Chew, Xian Zhe; Uichanco, Joseph Angelo; Shen, Xueyan (2021)...
Journal Publication ResearchOnline@JCU
Orbán, László; Shen, Xueyan; Phua, Norman; Varga, László (2021) 'Toward genome-based selection in As. Frontiers in Genetics, 12 . [DOI] ...
Journal Publication Open Access ResearchOnline@JCU
Li, Jia; Bian, Chao; Hu, Yinchang; Mu, Xidong; Shen, Xueyan; Ravi, Vydianathan; Kuznetsova, Inna S.;...
Journal Publication Open Access ResearchOnline@JCU
Shen, Xueyan; Ngoh, Si Yan; Thevasagayam, Natascha May; Prakki, Sai Rama Sridatta; Bhandare, Pranjal...
Journal Publication Open Access ResearchOnline@JCU