Projects 1
Publications 17
Awards 0

Contact Details

Research Fellow

    Biography

    I am a quantitative geneticist with a background in software engineering, bioinformatics and aquaculture. My passion lies in using data, genomics and innovative technologies to solve real-world challenges in animal breeding and sustainable food production.

    My research focuses on developing and applying genomic tools to improve breeding programmes for aquaculture species, helping producers achieve long-term gains in productivity, resilience and sustainability. I enjoy tackling complex problems that combine biology, statistics and computing, and I am particularly interested in translating cutting-edge research into practical industry outcomes.

    Outside of my research, I am committed to mentoring, supporting emerging professionals and promoting the value of science through community engagement, education and creative initiatives.

    Research

    Research Interests

    Selective breeding for economically important aquaculture species (pearl oyster, barramundi, grouper)

    Evaluation of genetic parameters and estimation of breeding values for aquaculture species using statistical tools

    Mass spawning mate allocation to enhance mating design using genetic algorithm (AI)

    Projects

    Teaching

    Research Advisor Accreditation

    Advisor Type

    Primary


    Current JCU Research Students

    Genetic Architecture and advanced selective Breeding of Health-related Production Traits in the Australian Giant Grouper (Epinephelus lanceolatus)
    Doctor of Philosophy (Agriculture, Environmental and Related Studies)
    Deciphering cryptocaryon disease resistance in barramundi (Lates calcarifer): Genetic architecture, interactions, and advanced genomic selection modelling
    Doctor of Philosophy (Agriculture, Environmental and Related Studies)
    Optimising selective breeding techniques for implementation into Black Tiger Prawn (Penaeus monodon) and Silver Lipped Pearl Oyster (Pinctada maxima) commercial breeding programs
    Doctor of Philosophy (Natural and Physical Sciences)

    Activities

    Employment

    Associations

    Output

    Kodagoda, Yasara Kavindi; Kim, Gaeun; Liyanage, D.S.; Omeka, W.K.M.; Park, Cheonguk; Kim, Jeongeun; Hanchapola, H.A.C.R.; Dilshan, M A.H.; Rodrigo, D.C.G.; Ganepola, G A.N.P.; Jones, David B.; Massault, Cecile; Jerry, Dean R.; Lee, Jihun; Lee, Jehee (2026) 'Genomic prediction of survival traits for scuticociliatosis resistance in a vaccinated olive flounder cohort: Comprehensive evaluation and optimization of statistical and machine learning models'. Aquaculture Reports, 47 . [DOI]
    Journal Publication Open Access ResearchOnline@JCU
    Massault, Cecile; Jones, David B.; Lillehammer, Marie; Cate, Holly; Harrison, Paul; Strugnell, Jan M.; Zenger, Kyall R.; Robinson, Nicholas A.; Jerry, Dean R. (2025) 'Accuracies of genomic prediction accounting for genotype by environment remain high when using small sets of selected SNPs in barramundi Lates calcarifer'. Aquaculture, 599 . [DOI]
    Journal Publication ResearchOnline@JCU
    Liyanage, D.S.; Lee, Sukkyoung; Yang, Hyerim; Lim, Chaehyeon; Omeka, W. K.M.; Sandamalika, W.M.Gayashani; Udayantha, H.M.V.; Kim, Gaeun; Hanchapola, H.A.C.R.; Ganeshalingam, Subothini; Jeong, Taehyug; Oh, Seong Rip; Won, Seung Hwan; Koh, Hyoung Bum; Kim, Mun Kwan; Jones, David B.; Massault, Cecile; Jerry, Dean R.; Lee, Jehee (2025) 'Genomic prediction of survival traits in the response of olive flounder (Paralichthys olivaceus) to viral hemorrhagic septicemia virus: Comparing machine learning models and traditional approaches'. Aquaculture, 595 (Part 2). [DOI]
    Journal Publication ResearchOnline@JCU
    Udayantha, H.M.V.; Kim, Jeongeun; Kim, Gaeun; Lee, Jihun; Lee, Sukkyoung; Park, Cheong Uk; Jones, David B.; Massault, Cecile; Jerry, Dean R.; Liyanage, D.S.; Lee, Jehee (2025) 'Genome-wide association and genomic prediction of thermal tolerance in olive flounders (Paralichthys olivaceus): A validation study'. Aquaculture Reports, 45 . [DOI]
    Journal Publication Open Access ResearchOnline@JCU
    Kodagoda, Yasara Kavindi; Kim, Gaeun; Liyanage, D. S.; Omeka, W. K.M.; Park, Cheonguk; Kim, Jeongeun; Lee, Ji Hun; Hanchapola, H. A.C.R.; Dilshan, M. A.H.; Rodrigo, D. C.G.; Jones, David B.; Massault, Cecile; Jerry, Dean R.; Lee, Jehee (2025) 'Genome-wide association mapping of scuticociliatosis resistance in a vaccinated population of olive flounder (Paralichthys olivaceus)'. Fish and Shellfish Immunology, 162 . [DOI]
    Journal Publication ResearchOnline@JCU
    Calcino, Andrew; Cooke, Ira; Cowman, Peter; Higgie, Megan; Massault, Cecile; Schmitz, Ulf; Whittaker, Maxine; Field, Matt A. (2024) 'Harnessing genomic technologies for one health solutions in the tropics'. Globalization and Health, 20 . [DOI]
    Journal Publication Open Access ResearchOnline@JCU
    Marcoli, Roberta; Jones, Dave B.; Massault, Cecile; Harrison, Paul J.; Cate, Holly; Jerry, Dean R. (2024) 'Barramundi (Lates calcarifer) rare coloration patterns: a multiomics approach to understand the “panda” phenotype'. Journal of Fish Biology, 105 (4):1268-1279. [DOI]
    Journal Publication Open Access ResearchOnline@JCU
    Marcoli, R.; Jones, D.B.; Massault, C.; Moran, M.; Harrison, P.; Cate, H.S.; Jerry, D.R. (2024) 'Revealing the genetic and molecular drivers behind golden and platinum coloration in barramundi (Lates calcarifer)'. Aquaculture, 586 . [DOI]
    Journal Publication Open Access ResearchOnline@JCU
    Omeka, W.K.M.; Liyanage, D.S.; Lee, Sukkyoung; Udayantha, H.M.V.; Kim, Gaeun; Ganeshalingam, Subothini; Jeong, Taehyug; Jones, David B.; Massault, Cecile; Jerry, Dean R.; Lee, Jehee (2024) 'Genomic prediction model optimization for growth traits of olive flounder (Paralichthys olivaceus)'. Aquaculture Reports, 36 . [DOI]
    Journal Publication Open Access ResearchOnline@JCU
    Udayantha, H.M.V.; Lee, Sukkyoung; Liyanage, D.S.; Lim, Chaehyeon; Jeong, Taehyug; Omeka, W.K.M.; Yang, Kyerim; Kim, Gaeun; Lee, Jihun; Nadarajapillai, Kishanthini; Ganeshalingam, Subothini; Park, Cheong-Uk; Lee, Jiwon; Oh, Seong-Rip; Gong, Po; Jang, Yeounghwan; Hyun, Jaemin; Park, Aejen; Koh, Hyoung-Bum; Kim, Mun-Kwan; Jones, David B.; Massault, Cecile; Jerry, Dean R.; Lee, Jeehee (2023) 'Identification of candidate variants and genes associated with temperature tolerance in olive flounders by Genome-Wide Association Study (GWAS)'. Aquaculture, 576 . [DOI]
    Journal Publication ResearchOnline@JCU
    Marcoli, R.; Jones, D.B.; Massault, C.; Marc, A.F.; Moran, M.; Harrison, P.J.; Cate, H.S.; Lopata, A.L.; Jerry, D.R. (2023) 'The skin structure in multiple color variants of barramundi (Lates calcarifer): A histological, immunohistochemical and ultrastructural overview'. Aquaculture, 576 . [DOI]
    Journal Publication Open Access ResearchOnline@JCU
    Liyanage, D.S.; Lee, Sukkyoung; Yang, Hyerim; Lim, Chaehyeon; Omeka, W.K.M.; Sandamalika, W.M. Gayashani; Udayantha, H.M.V.; Kim, Gaeun; Ganeshalingam, Subothini; Jeong, Taehyug; Oh, Seong-Rip; Won, Seung-Hwan; Koh, Hyoung-Bum; Kim, Mun-Kwan; Jones, David B.; Massault, Cecile; Jerry, Dean R.; Lee, Jehee (2022) 'Genome-wide association study of VHSV-resistance trait in Paralichthys olivaceus'. Fish and Shellfish Immunology, 124 :391-400. [DOI]
    Journal Publication ResearchOnline@JCU
    Massault, Cecile; Jeffrey, Cara; Jones, David B.; Barnard, Roger; Strugnell, Jan M.; Zenger, Kyall R.; Jerry, Dean R. (2022) 'Non-invasive DNA collection for parentage analysis for bivalves: A case study from the silver-lipped pearl oyster (Pinctada maxima)'. Aquaculture, 552 . [DOI]
    Journal Publication ResearchOnline@JCU
    Omeka, W.K.M.; Liyanage, D.S.; Lee, Sukkyoung; Lim, Chaehyeon; Yang, Hyerim; Sandamalika, W.M.Gayashani; Udayantha, H.M.V.; Kim, Gaeun; Ganeshalingam, Subothini; Jeong, Taehyug; Oh, Seong-Rip; Won, Seung-Hwan; Koh, Hyoung-Bum; Kim, Mun-Kwan; Jones, David B.; Massault, Cecile; Jerry, Dean R.; Lee, Jehee (2022) 'Genome-wide association study (GWAS) of growth traits in olive flounder (Paralichthys olivaceus)'. Aquaculture, 555 . [DOI]
    Journal Publication ResearchOnline@JCU
    Jerry, Dean R.; Jones, David B.; Lillehammer, Marie; Massault, Cecile; Loughnan, Shannon; Cate, Holly S.; Harrison, Paul J.; Strugnell, Jan M.; Zenger, Kyall R.; Robinson, Nicholas A. (2022) 'Predicted strong genetic gains from the application of genomic selection to improve growth related traits in barramundi (Lates calcarifer)'. Aquaculture, 549 . [DOI]
    Journal Publication ResearchOnline@JCU
    Massault, C.; Jones, D.B.; Zenger, K.; Strugnell, J.M.; Barnard, R.; Jerry, D.R. (2021) 'A SNP parentage assignment panel for the silver lipped pearl oyster (Pinctada maxima)'. Aquaculture Reports, 20 . [DOI]
    Journal Publication Open Access ResearchOnline@JCU
    Sukhavachana, Sila; Tongyoo, Pumipat; Massault, Cecile; McMillan, Nichanun; Leungnaruemitchai, Amorn; Poompuang, Supawadee (2020) 'Genome-wide association study and genomic prediction for resistance against Streptococcus agalactiae in hybrid red tilapia (Oreochromis spp.)'. Aquaculture, 525 . [DOI]
    Journal Publication ResearchOnline@JCU